DPL0481, DPL0481 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0481
Genbank IDGQ395025
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ395025
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0481_F: GAGCCCTCAGATCAACAAATACAT
Primer 2DPL0481_R: CTAGTTTCTATGTGCACTATGGCG
PolymorphismP_ DPL0481
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ395025
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D12chromosomeD12:63685485..63685710 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A12chromosomeA12:102859699..102859925 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018226.1chromosomeCM018226.1:59649095..59649326 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018213.1chromosomeCM018213.1:99134821..99135047 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:145114..145340 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_12chromosomeD10_12:54512199..54512403 +Gossypium turneri (D10) genome NSF_v1_a2
CM016625.1chromosomeCM016625.1:242536..242765 -Gossypium australe (G2) genome CRI_v1.1
scaffold2670.1supercontigscaffold2670.1:86597..86825 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold2480.1supercontigscaffold2480.1:93452..93678 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D12chromosomeD12:58998793..58999019 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A12chromosomeA12:87352358..87352584 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
scaffold121520supercontigscaffold121520:201..427 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D12chromosomeGhir_D12:62482198..62482423 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A12chromosomeGhir_A12:107496751..107496973 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D12chromosomeD12:61579624..61579852 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A12chromosomeA12:107403486..107403712 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D12chromosomeD12:62538701..62538929 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A12chromosomeA12:105645820..105646046 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D12chromosomeD12:60399735..60399963 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt12chromosomeDt12:63331614..63331842 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold32008supercontigscaffold32008:107910..108138 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold12532supercontigscaffold12532:132813..133039 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A12chromosomeGbar_A12:101950897..101951123 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Scaffold3767supercontigScaffold3767:14604..14829 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Scaffold3189supercontigScaffold3189:42928..43152 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D12chromosomeD12:60638940..60639168 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A12chromosomeA12:101465667..101465893 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017634.1chromosomeCM017634.1:60600408..60600621 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017621.1chromosomeCM017621.1:102702745..102702971 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017660.1chromosomeCM017660.1:63749146..63749359 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017647.1chromosomeCM017647.1:106593789..106594015 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017712.1chromosomeCM017712.1:61071108..61071342 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017699.1chromosomeCM017699.1:101814272..101814498 +Gossypium darwinii (AD5) genome HGS_v1.1
D12chromosomeD12:63105962..63106190 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A12chromosomeA12:109261158..109261384 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr12chromosomeChr12:110187936..110188162 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr12chromosomeChr12:117089419..117089645 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr08chromosomeChr08:58047876..58048091 +Gossypium thurberi (D1-5) genome CRI_v1
chr08chromosomechr08:45585314..45585864 +Gossypium armourianum (D2-1) genome ISU_v1
Chr_08chromosomeChr_08:43186883..43187087 +Gossypium harknessii (D2-2) genome ISU_v1
Chr08chromosomeChr08:59707748..59707954 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr08chromosomeChr08:42109916..42110147 +Gossypium aridum (D4) genome ISU_v1
Chr08chromosomeChr08:33410940..33411258 +Gossypium gossypioides (D6) genome ISU_v1
Chr08chromosomeChr08:41088954..41089185 +Gossypium lobatum (D7) genome ISU_v1
F12chromosomeF12:91149073..91149295 +Gossypium longicalyx (F1) genome NSF_v1
Chr12chromosomeChr12:174300697..174300913 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr08chromosomeDPL0481:1..740 .
Chr08:56947266..56947940 +
Chr8chromosomeDPL0481:1..740 .
Chr8:1775919..1776593 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ395025GQ395025Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch26_Dt.12N/A112.34DPL0481View
2Yumian-1 x 7235, RIL (2015)AD_ch26_Dt.12N/A0DPL0481View
3TM-1 x 3-79, RIL (2014)AD_ch26_Dt.12N/A118.8DPL0481View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch26_Dt.12N/A2.8DPL0481View
5Monsanto SSR Bin Map, (2009)AD_ch26_Dt.12N/A0DPL0481View
6TM-1 x 3-79, RIL (2012.v3)AD_ch26_Dt.12N/A118.76DPL0481View
Sequence
>DPL0481 ID=DPL0481; Name=DPL0481; organism=Gossypium hirsutum; type=genetic_marker; length=229bp
GAGCCCTCAGATCAACAAATACATTTCTTTGATCTGCGAAATATGACCAG
CCGTAAGCATGAAGTTAGAAGTTAGAAGTTAGAAAATATAGACAATTTAG
GAATAGTTTTGAAGGAAATTTAATATGACATTTATAGACACTAAATGTGT
AATAATAATAATAATAATAATAATAATAATAATAATAAAACAAGAGAAGA
AAACTCGCCATAGTGCACATAGAAACTAG