DPL0444, DPL0444 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0444
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0444_orig
Source Typegenomic
Repeat Motif(AAT)10
PCR ConditionAnnealing temperature: 55
Primer 1DPL0444_F: GGCACGAATTCCTTCAAGATT
Primer 2DPL0444_R: ATATATCTCTGCACACACGCTGAA
PolymorphismP_ DPL0444
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:13203906..13204061 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:12321398..12321560 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:11732870..11733032 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:48685461..48685624 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:20141257..20141416 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr9chromosomeDt_chr9:56958510..56958665 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:12391689..12391844 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:12833637..12833789 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:12535460..12535615 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:12671375..12671527 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:12545453..12545608 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:12769938..12770100 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:12772030..12772192 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:12676565..12676721 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:13108671..13108830 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:12664143..12664305 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:12987139..12987294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:11787056..11787218 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_05chromosomeB_05:72310374..72310531 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr09chromosomeChr09:12218376..12218532 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:11046448..11046605 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr09chromosomeChr09:12569950..12570106 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeChr09:10776234..10776516 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:9202105..9202265 +Gossypium gossypioides (D6) genome ISU_v1n/a
E05chromosomeE05:15099097..15099249 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:12040344..12040500 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0444_origDPL0444_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A151DPL0444View
2TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A65.02DPL0444View
3AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A150DPL0444View
4TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A122.4DPL0444View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch19_Dt.05N/A144.5DPL0444View
6TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A122.41DPL0444View
7PD 94042 x (AD)4-08, F2 (2016)AD_ch19_Dt.05N/A91.1DPL0444View
Sequence
>DPL0444 ID=DPL0444; Name=DPL0444; organism=Gossypium hirsutum; type=genetic_marker; length=156bp
GGCACGAATTCCTTCAAGATTGATAATTTTAGAGATAAAAGTGAGCAACC
TAACCAATAATAATAATAATAATAATAATAATAATAAAAGAGCAAGGCGG
AAGGGATAAAAGTGGGTGCAACCGATTCATGATTCAGCGTGTGTGCAGAG
ATATAT