DPL0283, DPL0283 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0283
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0283_orig
Source Typegenomic
Repeat Motif(TGA)10
PCR ConditionAnnealing temperature: 55
Primer 1DPL0283_F: AGAAACAGATATGACACCTGCTGA
Primer 2DPL0283_R: CCTTCTGTTCTTTCTCTGCCTTTA
PolymorphismP_ DPL0283
ContactFang, David D.
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Fang, David D.
Description:Molecular markers, fiber development
First name:David
Last name:Fang
Title:Supervisory Research Geneticist
Institution:USDA-ARS-SRRC-CFBRU
Address:1100 Robert E. Lee Blvd, New Orleans, LA 70124
Country:United States
Email:david.fang@usda.gov
Phone:504 286 4527
Fax:001662686-5218
Keywords:Structural Genomics
Last update:2-Jul-2009
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:55757207..55757397 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A07chromosomeA07:91519153..91519340 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:53667655..53667857 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:91489965..91490152 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:49135494..49135684 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_07chromosomeKI_07:227769..227953 +Gossypioides kirkii genome ISU_v3n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:94966213..94966400 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:2567264..2567454 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:4096499..4096683 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr1chromosomeDt_chr1:85475359..85475546 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:47920502..47920692 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:52874596..52874786 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:75974387..75974574 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:56843012..56843202 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:95414230..95414417 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:56096755..56096945 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:94376551..94376738 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:56469931..56470121 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:94422764..94422951 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:52800054..52800244 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:90932748..90932935 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt07chromosomeDt07:58239757..58239944 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold17796supercontigscaffold17796:160220..160407 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold249supercontigscaffold249:144808..144995 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D07chromosomeGbar_D07:54057729..54057931 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold2733supercontigScaffold2733:24630..24817 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D07chromosomeGbar_D07:53964171..53964373 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:54661075..54661274 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:92785791..92785978 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:54632491..54632681 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:94472826..94473013 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:55638531..55638724 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:97442665..97442852 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:54708021..54708217 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:92812379..92812566 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:57062021..57062211 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:96584028..96584215 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:98304426..98304613 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:99615547..99615734 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:2338105..2338295 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:82566885..82567072 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:53550816..53551003 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr01chromosomechr01:43443209..43443568 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_01chromosomeChr_01:38409631..38409821 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:53294380..53294567 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:40436697..40436884 +Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:39033279..39033466 +Gossypium lobatum (D7) genome ISU_v1n/a
F07chromosomeF07:80146282..80146469 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0283_origDPL0283_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A48.86DPL0283View
2TM-1 x 3-79, RIL (2012)AD_ch16_Dt.07N/A95.48DPL0283View
3TM-1 x 3-79, RIL (2014)AD_ch16_Dt.07N/A8.1DPL0283View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch16_Dt.07N/A22.1DPL0283View
5TM-1 x 3-79, RIL (2012.v3)AD_ch16_Dt.07N/A8.09DPL0283View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch16_Dt.07N/A7.1DPL0283View
Sequence
>DPL0283 ID=DPL0283; Name=DPL0283; organism=Gossypium hirsutum; type=genetic_marker; length=191bp
AGAAACAGATATGACACCTGCTGATGTTGCTGAGAACTTGATGTTGAAAT
CTGATGATGATGATGATGATGATGATGATGAAGTTGAAACTTGTTTGAAG
AATTTGATTGAAGCACTTAAGACTGCAAAAGACGAAGCAAGCAAGAAAGC
TGAGGAAGATGCTCGTTTAAAGGCAGAGAAAGAACAGAAGG