DPL0248, DPL0248 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0248
AliasDPL248
Genbank IDGQ394915
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Delta Opal
Source SequenceGQ394915
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0248_F: CTGAACTCGGGTCTTAAGAAGAAA
Primer 2DPL0248_R: ATGGAAGCGATGGTTACATTTG
PolymorphismP_ DPL0248
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394915
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A12chromosomeA12:10059374..10059547 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018226.1chromosomeCM018226.1:7260834..7261007 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018213.1chromosomeCM018213.1:9571567..9571737 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_12chromosomeD5_12:50219643..50219804 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_12chromosomeKI_12:15170176..15170337 -Gossypioides kirkii genome ISU_v3
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:97160280..97160447 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_12chromosomeD10_12:5248936..5249106 -Gossypium turneri (D10) genome NSF_v1_a2
CM016625.1chromosomeCM016625.1:26613435..26613599 -Gossypium australe (G2) genome CRI_v1.1
Dt_chr8chromosomeDt_chr8:5335725..5335901 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr8chromosomeAt_chr8:38348900..38349073 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D12chromosomeD12:7471481..7471657 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A12chromosomeA12:9732286..9732459 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D12chromosomeGhir_D12:7443463..7443639 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A12chromosomeGhir_A12:9846349..9846522 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D12chromosomeD12:7301193..7301369 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A12chromosomeA12:9417454..9417627 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D12chromosomeD12:7448211..7448387 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A12chromosomeA12:9817851..9818024 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D12chromosomeD12:7388977..7389153 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A12chromosomeA12:9800482..9800655 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold15234supercontigscaffold15234:40334..40504 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D12chromosomeGbar_D12:7190535..7190708 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A12chromosomeGbar_A12:9830910..9831080 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D12chromosomeD12:7145524..7145697 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A12chromosomeA12:9516793..9516960 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017634.1chromosomeCM017634.1:7233100..7233270 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017621.1chromosomeCM017621.1:9532911..9533087 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017660.1chromosomeCM017660.1:7338113..7338277 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017647.1chromosomeCM017647.1:10100893..10101060 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017712.1chromosomeCM017712.1:7127096..7127269 -Gossypium darwinii (AD5) genome HGS_v1.1
CM017699.1chromosomeCM017699.1:9494374..9494541 -Gossypium darwinii (AD5) genome HGS_v1.1
D12chromosomeD12:7616609..7616785 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A12chromosomeA12:9848705..9848875 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr12chromosomeChr12:10225515..10225682 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr12chromosomeChr12:10060109..10060276 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr12chromosomeChr12:7185620..7185781 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_12chromosomeB_12:10855568..10855732 -Gossypium anomalum (B1) genome NSF_v1
Chr08chromosomeChr08:7335241..7335411 -Gossypium thurberi (D1-5) genome CRI_v1
chr08chromosomechr08:6873409..6873591 -Gossypium armourianum (D2-1) genome ISU_v1
Chr_08chromosomeChr_08:6818449..6818619 -Gossypium harknessii (D2-2) genome ISU_v1
Chr08chromosomeChr08:7499566..7499730 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr08chromosomeChr08:6392263..6392430 -Gossypium aridum (D4) genome ISU_v1
Chr08chromosomeChr08:4715426..4715596 -Gossypium gossypioides (D6) genome ISU_v1
Chr08chromosomeChr08:5983699..5984008 -Gossypium lobatum (D7) genome ISU_v1
E12chromosomeE12:11236359..11236523 -Gossypium stocksii (E1) genome NSF_v1
F12chromosomeF12:8728046..8728210 -Gossypium longicalyx (F1) genome NSF_v1
Chr12chromosomeChr12:143817063..143817227 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr08chromosomeDPL0248:1..593 .
Chr08:7103939..7104516 -
Chr8chromosomeDPL0248:1..593 .
Chr8:60803608..60804185 -
Germplasm
Stock NameType
Delta Opalaccession
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394915GQ394915Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch12_At.12N/A38.3DPL0248aView
2Monsanto SSR Bin Map, (2009)AD_ch12_At.12N/A81DPL0248aView
3TM-1 x 3-79, RIL (2014)AD_ch26_Dt.12N/A31.2DPL0248cView
4Monsanto SSR Bin Map, (2009)AD_ch26_Dt.12N/A101DPL0248cView
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch12_At.12N/A18DPL0248View
6TM-1 x 3-79, RIL (2012.v3)AD_ch12_At.12N/A38.26DPL0248aView
7TM-1 x 3-79, RIL (2012.v3)AD_ch26_Dt.12N/A31.17DPL0248cView
8TM-1 x Hai-7124, BC1 (2012)AD_ch12_At.12N/A54dPL0248-390View
Sequence
>DPL0248 ID=DPL0248; Name=DPL0248; organism=Gossypium hirsutum; type=genetic_marker; length=177bp
CTGAACTCGGGTCTTAAGAAGAAAGAAATGGTAGCTTTACCAACTACAAC
TTATGCCAATTCAGGCTCATCATCATCATCATCATCATCATCATCATCAG
GTTGTGCAATTTGCCTCGTGGATTTCTCGGAAGGTGACAAAATACGGATG
CTTCCCAAATGTAACCATCGCTTCCAT