DPL0170, DPL0170 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0170
Genbank IDGQ394884
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394884
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0170_F: AGCACAAGAAAGAAGGAAGGAAG
Primer 2DPL0170_R: GCTCAAAGACCTGAGTTTGATTCT
PolymorphismP_ DPL0170
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394884
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
A03chromosomeA03:80787533..80787766 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018204.1chromosomeCM018204.1:82308062..82308289 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:106319470..106319705 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
At_chr5chromosomeAt_chr5:18909404..18909637 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
A03chromosomeA03:74227146..74227379 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_A03chromosomeGhir_A03:88148828..88149061 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
A03chromosomeA03:87444231..87444464 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A03chromosomeA03:85200675..85200907 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A03chromosomeA03:80769543..80769776 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold2508supercontigscaffold2508:64833..65060 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_A03chromosomeGbar_A03:81573857..81574084 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
A03chromosomeA03:83778748..83778975 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017612.1chromosomeCM017612.1:83314623..83314850 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017690.1chromosomeCM017690.1:83713103..83713328 +Gossypium darwinii (AD5) genome HGS_v1.1
A03chromosomeA03:88667161..88667394 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr03chromosomeChr03:29652323..29652550 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr03chromosomeChr03:28757705..28757941 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394884GQ394884Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch03_At.03N/A57.9DPL0170View
2Monsanto SSR Bin Map, (2009)AD_ch03_At.03N/A121DPL0170View
3TM-1 x 3-79, RIL (2012.v3)AD_ch03_At.03N/A57.86DPL0170View
Sequence
>DPL0170 ID=DPL0170; Name=DPL0170; organism=Gossypium hirsutum; type=genetic_marker; length=232bp
AGCACAAGAAAGAAGGAAGGAAGAAAAATGAGAGAGAGAGAGAGAGAGAG
AGAGAGAAGAAGAGGTGAATGGCTAAGGTAGAAAATATGTTAGAAAAGTT
AAAAATTAAATGAACAAGTTATATTTATACCTAGGGTTACAAGCCTGACA
GTACAAAATTAGGAGATGGAGTAAGTTTAGCAAAAATTAAGTCTTTTTAC
AAGGGAAGAGAATCAAACTCAGGTCTTTGAGC