DPL0149, DPL0149 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0149
Genbank IDGQ394873
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceGQ394873
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0149_F: GACTCTTGCTGAGTTTGTACCTCC
Primer 2DPL0149_R: CGTTGTACCTACGGATTTCATGT
PolymorphismP_ DPL0149
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394873
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:7186874..7187039 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:8469498..8469648 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:6778965..6779107 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:55640004..55640160 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:121169242..121169376 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:57366534..57366686 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:10530250..10530404 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr11chromosomeDt_chr11:1839403..1839569 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr11chromosomeAt_chr11:60743760..60743910 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold112667supercontigscaffold112667:106..256 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D10chromosomeD10:6769343..6769493 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:7705183..7705333 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:7331021..7331185 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:8000249..8000399 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:6947562..6947728 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:7996180..7996330 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:7169471..7169635 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:7527415..7527565 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:7279890..7280044 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:8346555..8346705 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:7230638..7230780 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12136supercontigscaffold12136:83236..83376 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14522supercontigscaffold14522:138400..138542 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:6881344..6881486 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:8138643..8138783 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:6952220..6952362 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:8008693..8008833 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:6841342..6841484 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:7952582..7952724 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:7027303..7027483 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:8431971..8432119 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:6995454..6995596 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:8103232..8103372 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:7181002..7181168 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:8379658..8379808 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:8197099..8197233 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:6756828..6756983 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:92383976..92384136 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:6731184..6731330 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:6410998..6411226 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:5394029..5394264 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:6989334..6989473 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:5968136..5968285 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:4831906..4832040 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:6011581..6011806 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:104607183..104607327 +Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:6974703..6974896 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:156624479..156624626 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr11chromosomeDPL0149:14..751 .
Chr11:8930804..8931545 -		n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394873GQ394873Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch10_At.10N/A95.5DPL0149aView
2Monsanto SSR Bin Map, (2009)AD_ch10_At.10N/A121DPL0149aView
3TM-1 x 3-79, RIL (2014)AD_ch20_Dt.10N/A87.8DPL0149bView
4Monsanto SSR Bin Map, (2009)AD_ch20_Dt.10N/A141DPL0149bView
5TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch10_At.10N/A54.7DPL0149View
6CCRI-36 x G2005, RIL (2016)AD_ch01_At.01N/A7.74DPL0149View
7TM-1 x 3-79, RIL (2012.v3)AD_ch10_At.10N/A95.47DPL0149aView
8TM-1 x 3-79, RIL (2012.v3)AD_ch20_Dt.10N/A87.77DPL0149bView
9MGG-293-793, MAGIC (2018)AD_ch10_At.10N/A130.39MON_DPL0149View
Sequence
>DPL0149 ID=DPL0149; Name=DPL0149; organism=Gossypium hirsutum; type=genetic_marker; length=151bp
GACTCTTGCTGAGTTTGTACCTCCATTTGTTTTTCTTGGAAAAAAAGTTG
GACCTAAAAGACAAAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AAGATTTGTGAATGCCATTATGAACTTAACATGAAATCCGTAGGTACAAC
G