DPL0145, DPL0145 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0145
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceDPL0145_orig
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0145_F: GATATACGGTCCAAGTCAGGAGAC
Primer 2DPL0145_R: AGTCGGTGAAGTGAAGTGCATATT
PolymorphismP_ DPL0145
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D05chromosomeD05:13280365..13280576 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A05chromosomeA05:14176668..14176878 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018219.1chromosomeCM018219.1:12379463..12379668 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_05chromosomeD5_05:11798592..11798809 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_05chromosomeKI_05:10682400..10682606 -Gossypioides kirkii genome ISU_v3
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:13867873..13868086 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_05chromosomeD10_05:48633616..48633852 +Gossypium turneri (D10) genome NSF_v1_a2
CM016626.1chromosomeCM016626.1:20203414..20203615 -Gossypium australe (G2) genome CRI_v1.1
Dt_chr9chromosomeDt_chr9:56880001..56880214 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr9chromosomeAt_chr9:72010373..72010585 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
scaffold4070_D05supercontigscaffold4070_D05:17425..17636 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A05chromosomeA05:12471672..12471882 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D05chromosomeGhir_D05:12909962..12910171 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A05chromosomeGhir_A05:14068050..14068257 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D05chromosomeD05:12610559..12610771 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A05chromosomeA05:13619404..13619614 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D05chromosomeD05:12747804..12748016 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D05chromosomeD05:12621919..12622131 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A05chromosomeA05:14324266..14324476 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
scaffold26927supercontigscaffold26927:35537..35745 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold17189supercontigscaffold17189:9479..9688 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D05chromosomeGbar_D05:12827991..12828196 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D05chromosomeD05:12829990..12830195 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A05chromosomeA05:14021963..14022173 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017627.1chromosomeCM017627.1:12741667..12741913 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017614.1chromosomeCM017614.1:13826376..13826584 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017653.1chromosomeCM017653.1:13162672..13162889 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017705.1chromosomeCM017705.1:12722477..12722698 -Gossypium darwinii (AD5) genome HGS_v1.1
CM017692.1chromosomeCM017692.1:13699145..13699355 -Gossypium darwinii (AD5) genome HGS_v1.1
D05chromosomeD05:13080894..13081105 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A05chromosomeA05:14318664..14318874 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr05chromosomeChr05:14715202..14715412 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr05chromosomeChr05:13720048..13720262 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr05chromosomeChr05:11852630..11852841 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_05chromosomeB_05:72250380..72250624 +Gossypium anomalum (B1) genome NSF_v1
Chr09chromosomeChr09:12288839..12289050 -Gossypium thurberi (D1-5) genome CRI_v1
chr09chromosomechr09:11088757..11088962 -Gossypium armourianum (D2-1) genome ISU_v1
Chr_09chromosomeChr_09:10705402..10705612 -Gossypium harknessii (D2-2) genome ISU_v1
Chr09chromosomeChr09:12621373..12621582 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr09_658658chromosomeChr09_658658:746..943 +Gossypium aridum (D4) genome ISU_v1
Chr09chromosomeChr09:9236857..9237072 -Gossypium gossypioides (D6) genome ISU_v1
Chr09chromosomeChr09:10643478..10643685 -Gossypium lobatum (D7) genome ISU_v1
E05chromosomeE05:15166843..15167046 -Gossypium stocksii (E1) genome NSF_v1
F05chromosomeF05:12096445..12096657 -Gossypium longicalyx (F1) genome NSF_v1
Chr13chromosomeChr13:181791642..181791851 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Chr09chromosomeDPL0145:1..793 .
Chr09:11755993..11756790 -
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DPL0145_origDPL0145_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch05_At.05N/A142.6DPL0145bView
2Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A121DPL0145bView
3TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A123.8DPL0145aView
4Monsanto SSR Bin Map, (2009)AD_ch19_Dt.05N/A181DPL0145aView
5TM-1 x 3-79, RIL (2012.v3)AD_ch05_At.05N/A142.62DPL0145bView
6TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A123.83DPL0145aView
7TM-1 x Hai-7124, BC1 (2012)AD_ch19_Dt.05N/A124.5dPL0145-330View
Sequence
>DPL0145 ID=DPL0145; Name=DPL0145; organism=Gossypium hirsutum; type=genetic_marker; length=213bp
GATATACGGTCCAAGTCAGGAGACCAGCCTTCCCCCCCCCCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCGTTTAAGCCTTTTGCAGCTTCAGTACTTTCA
AAAGCATAGCCTGAAAAATGGCAGCCACAGTCTGCAAGAAAAAGCAAAAG
AAAAGAATTTGGATATGGTAAAATAATCCGATGCTTCAAAATATGCACTT
CACTTCACCGACT