DPL0053, DPL0053 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0053
AliasDPL053
Genbank IDGQ394824
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Delta Opal
Source SequenceGQ394824
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0053_F: ACCGACATGAATTCACGAAAGA
Primer 2DPL0053_R: CACTGTATCCTTTCCATTAACCGT
PolymorphismP_ DPL0053
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394824
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:11367876..11368090 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:11446222..11446444 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:10991886..10992120 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:49449719..49449922 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr2chromosomeDt_chr2:44051578..44051792 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:10619988..10620202 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:11929417..11929631 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:11681010..11681224 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:11459543..11459753 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:11819465..11819679 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt01chromosomeDt01:10693060..10693280 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10212supercontigscaffold10212:24056..24276 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:12053578..12053798 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:11870112..11870334 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:11655244..11655458 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:12577137..12577351 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:11835209..11835433 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:12138218..12138432 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:10872898..10873119 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:11813864..11814075 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:10416306..10416631 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:9373888..9374201 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:11661426..11661619 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:11672807..11673013 -Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:10543075..10543267 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Delta Opalaccession
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
GQ394824GQ394824Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A97.2DPL0053aView
2Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A101DPL0053aView
3TM-1 x 3-79, RIL (2014)AD_ch15_Dt.01N/A68.3DPL0053bView
4Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A61DPL0053bView
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch15_Dt.01N/A100.7DPL0053View
6TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A97.23DPL0053aView
7TM-1 x 3-79, RIL (2012.v3)AD_ch15_Dt.01N/A68.27DPL0053bView
Sequence
>DPL0053 ID=DPL0053; Name=DPL0053; organism=Gossypium hirsutum; type=genetic_marker; length=217bp
ACCGACATGAATTCACGAAAGAAAAACTTTTCTTGCGAAGAAAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAGAGAATGAGAGTTTTTA
GAGAGAGAATGAAAGAAGAGAATTTTTTGGGAGGAATATGTGAAGAAAGA
GAAAGAGAAAAAATAGGAATCGGGATAAACGGCGTTAGTTTGGACGGTTA
ATGGAAAGGATACAGTG