DPL0017, DPL0017 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDPL0017
Genbank IDGQ394807
TypeSSR
SpeciesGossypium hirsutum
GermplasmDelta Opal
Source SequenceMONCS1830
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1DPL0017_F: ATACACTCCACATGCTAGGGAGAT
Primer 2DPL0017_R: CTCATCAGCCAAACAGCTTTC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394807
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:1964790..1965039 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:1763140..1763368 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:1718122..1718322 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_02chromosomeD10_02:1644186..1644387 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:15854783..15855026 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:1837607..1837835 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:1899095..1899343 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:1851414..1851665 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:1907537..1907790 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:1906060..1906311 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt03chromosomeDt03:2281303..2281529 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold14412supercontigscaffold14412:19795..20021 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:1815417..1815643 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:1851816..1852046 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:1852455..1852714 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:1916495..1916763 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:1823611..1823845 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:1983217..1983461 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:1725781..1725982 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:72098585..72098793 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:1749658..1749862 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:1824460..1825006 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr03chromosomeChr03:1491626..1492204 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:1334075..1334283 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:137487147..137487356 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr03chromosomeDPL0017:1..589 .
Chr03:1727901..1728441 -		n/a
Chr3chromosomeDPL0017:1..589 .
Chr3:24836354..24836894 +		n/a
Germplasm
Stock NameType
Delta Opalaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1830MONCS1830Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch14_Dt.02N/A31.4DPL0017View
20-153 x sGK9708, RIL (2016)AD_ch17_Dt.03N/A0DPL0017View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch17_Dt.03N/A107.7DPL0017View
4Monsanto SSR Bin Map, (2009)AD_ch17_Dt.03N/A121DPL0017View
5TM-1 x 3-79, RIL (2012.v3)AD_ch14_Dt.02N/A31.45DPL0017View
Sequence
>DPL0017 ID=DPL0017; Name=DPL0017; organism=Gossypium hirsutum; type=genetic_marker; length=250bp
ATACACTCCACATGCTAGGGAGATGTTGTCTCTTTAGTTTGTTTTATATA
TACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGATTAATGGAATACCCTTTAAAGTTTTTTTTTTT
CTCAGCAAAACTTTTAAAGTTTAACCTTTTTTGCCTTTCTGTAAGGGAAA
CTTGAGTTAAGATTCAGCTAAAAGCCATTGAAAGCTGTTTGGCTGATGAG