DC40188, DC40188 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40188
Genbank IDGQ394660
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1683
Source Typegenomic
Primer 1DC40188_F: CCTTAAATGCCGAATTCAT
Primer 2DC40188_R: AGCCGATCTCAGTGTCTG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394660
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:29998775..29999029 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:29307875..29308141 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:41752729..41752987 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:98240749..98241003 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:26868663..26868917 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:29603152..29603406 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:29782103..29782357 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:29361820..29362072 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:29114702..29114956 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:28347683..28347946 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3382supercontigscaffold3382:170383..170646 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:29638605..29638869 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Scaffold2378supercontigScaffold2378:11860..12120 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:29623487..29623751 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:29843509..29843773 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:30067266..30067534 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:30835058..30835312 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:90023924..90024196 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1683MONCS1683Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch10_At.10N/A80.5DC40188View
2TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch10_At.10N/A33.5DC40188View
3Monsanto SSR Bin Map, (2009)AD_ch10_At.10N/A101DC40188View
4TM-1 x 3-79, RIL (2012.v3)AD_ch10_At.10N/A80.48DC40188View
5TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A68.4dc40188-390View
Sequence
>DC40188 ID=DC40188; Name=DC40188; organism=Gossypium hirsutum; type=genetic_marker; length=255bp
CCTTAAATGCCGAATTCATTCACACACACACACACACACACATATATATA
TCGTTCTTTGATACTAGTAAATCACTTAGAATCAACTCAATGTTATTGTT
GTTGATGCCATTGCCATTTGATTCATCCCATTGTTTCAAGAGAATTTGAG
TTAGATAATGCAATGGTTGCTCATATTTTTGCTTTATTGATTCTCCCAGT
TTTTCCCATGTGATAAGTGATCACTATTTGAGAGAAACAGACACTGAGAT
CGGCT