DC40185, DC40185 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40185
Genbank IDGQ394657
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1680
Source Typegenomic
Primer 1DC40185_F: TCAAATGGTAGAAATGGCA
Primer 2DC40185_R: CCAAAGATTGAAGTAACCCA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394657
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:12466792..12467091 +
A12chromosomeA12:17090153..17090444 +
CM018226.1chromosomeCM018226.1:12130615..12130926 +
CM018213.1chromosomeCM018213.1:16317665..16317948 +
D5_12chromosomeD5_12:45463919..45464202 -
D10_12chromosomeD10_12:9018588..9018867 +
CM016625.1chromosomeCM016625.1:37774370..37774657 +
Dt_chr8chromosomeDt_chr8:18116841..18117140 -
At_chr8chromosomeAt_chr8:33423889..33424182 -
D12chromosomeD12:12509440..12509739 +
A12chromosomeA12:16438205..16438496 +
Ghir_D12chromosomeGhir_D12:12399154..12399453 +
Ghir_A12chromosomeGhir_A12:16710407..16710698 +
D12chromosomeD12:12132690..12132989 +
A12chromosomeA12:16078602..16078893 +
D12chromosomeD12:12438771..12439070 +
A12chromosomeA12:16679517..16679808 +
D12chromosomeD12:12353866..12354165 +
A12chromosomeA12:16682134..16682425 +
Dt12chromosomeDt12:13491881..13492192 +
scaffold4823supercontigscaffold4823:18127..18438 +
scaffold1112supercontigscaffold1112:301693..301976 -
Gbar_D12chromosomeGbar_D12:12157126..12157435 +
Gbar_A12chromosomeGbar_A12:16562814..16563097 +
D12chromosomeD12:11971798..11972109 +
A12chromosomeA12:16178751..16179034 +
CM017634.1chromosomeCM017634.1:12183556..12183867 +
CM017621.1chromosomeCM017621.1:16261547..16261850 +
CM017660.1chromosomeCM017660.1:12358102..12358395 +
CM017647.1chromosomeCM017647.1:16820049..16820341 +
CM017699.1chromosomeCM017699.1:16229806..16230085 +
D12chromosomeD12:12638186..12638485 +
A12chromosomeA12:16796050..16796341 +
Chr12chromosomeChr12:76367361..76367674 -
Chr12chromosomeChr12:12063121..12063404 +
Chr08chromosomeChr08:12213785..12214070 +
chr08chromosomechr08:11029319..11029600 +
Chr_08chromosomeChr_08:10890494..10890773 +
Chr08chromosomeChr08:12429215..12429484 +
Chr08chromosomeChr08:10308832..10309111 +
Chr08chromosomeChr08:7744594..7744876 +
Chr08chromosomeChr08:9581899..9582274 +
F12chromosomeF12:14653334..14653665 +
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1680MONCS1680Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch12_At.12N/A45.8DC40185View
Sequence
>DC40185 ID=DC40185; Name=DC40185; organism=Gossypium hirsutum; type=genetic_marker; length=300bp
TCAAATGGTAGAAATGGCAACATTGAGATATGACTATATATGATTTTTAA
CGTGTTTATGTAATCATCTAATAATTTAATGTTTTACTTGTCTAATTGAA
TGCTTCATGCTTATAATTGAGTTGTTTTCTTACTTGCCAAGTAAGCAAAT
AAGTATGTATCTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTCTGTGATC
ACATAAAGCTAGATGTTGATATGTGGTGATTGCTAAATTGGCATTTGAAT
TAATGCCTAAGAATTACAAGTGATAAGTTTTGGGTTACTTCAATCTTTGG