DC40134, DC40134 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40134
Genbank IDGQ394634
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1657
Source Typegenomic
Primer 1DC40134_F: CTTCGAAACTGGACGAGA
Primer 2DC40134_R: GCAGCTATACCTTGACACG
PolymorphismP_ DC40134
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394634
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D09chromosomeD09:47975248..47975551 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A09chromosomeA09:76573458..76573767 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018223.1chromosomeCM018223.1:45584852..45585155 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018210.1chromosomeCM018210.1:71729396..71729721 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
D5_09chromosomeD5_09:39021975..39022276 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1
KI_09chromosomeKI_09:34676348..34676655 -Gossypioides kirkii genome ISU_v3
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:79167668..79167984 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_09chromosomeD10_09:4818659..4818959 +Gossypium turneri (D10) genome NSF_v1_a2
CM016622.1chromosomeCM016622.1:7111917..7112230 +Gossypium australe (G2) genome CRI_v1.1
Dt_chr6chromosomeDt_chr6:4749633..4749936 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
At_chr11chromosomeAt_chr11:7261479..7261792 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1
D09chromosomeD09:45746157..45746460 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A09chromosomeA09:70548554..70548863 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D09chromosomeGhir_D09:47762467..47762768 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D09chromosomeD09:47161595..47161898 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A09chromosomeA09:77660748..77661057 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D09chromosomeD09:47494788..47495091 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A09chromosomeA09:77754621..77754934 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
D09chromosomeD09:45593924..45594227 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
A09chromosomeA09:74636965..74637274 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt09chromosomeDt09:47781433..47781736 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
At09chromosomeAt09:73448785..73449106 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold34195supercontigscaffold34195:2487..2808 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold16902supercontigscaffold16902:48748..49051 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D09chromosomeGbar_D09:46342095..46342398 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A09chromosomeGbar_A09:72346346..72346669 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D09chromosomeD09:48854755..48855058 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A09chromosomeA09:73777161..73777486 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017631.1chromosomeCM017631.1:46563748..46564051 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017618.1chromosomeCM017618.1:73716359..73716678 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017657.1chromosomeCM017657.1:48023713..48024016 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017644.1chromosomeCM017644.1:76666655..76666970 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017709.1chromosomeCM017709.1:47193860..47194163 -Gossypium darwinii (AD5) genome HGS_v1.1
CM017696.1chromosomeCM017696.1:73876678..73876983 -Gossypium darwinii (AD5) genome HGS_v1.1
D09chromosomeD09:49297598..49297901 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A09chromosomeA09:79542995..79543304 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr09chromosomeChr09:78708974..78709287 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr09chromosomeChr09:81495766..81496082 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr09chromosomeChr09:45244830..45245131 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_09chromosomeB_09:65243589..65243898 -Gossypium anomalum (B1) genome NSF_v1
chr06chromosomechr06:37970366..37970667 -Gossypium armourianum (D2-1) genome ISU_v1
Chr_06chromosomeChr_06:31840762..31841062 -Gossypium harknessii (D2-2) genome ISU_v1
Chr06chromosomeChr06:47045836..47046139 -Gossypium davidsonii (D3d-8) genome CRI_v1
Chr06chromosomeChr06:35195918..35196223 -Gossypium aridum (D4) genome ISU_v1
Chr06chromosomeChr06:26613673..26613974 -Gossypium gossypioides (D6) genome ISU_v1
Chr06chromosomeChr06:32607856..32608157 -Gossypium lobatum (D7) genome ISU_v1
E09chromosomeE09:6435360..6435665 +Gossypium stocksii (E1) genome NSF_v1
F09chromosomeF09:65861112..65861423 -Gossypium longicalyx (F1) genome NSF_v1
Chr09chromosomeChr09:125991408..125991711 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1657MONCS1657Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2014)AD_ch09_At.09N/A97.8DC40134View
2CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A133.9DC40134View
3Monsanto SSR Bin Map, (2009)AD_ch09_At.09N/A21DC40134View
4TM-1 x 3-79, RIL (2012.v3)AD_ch09_At.09N/A97.84DC40134View
5TM-1 x Hai-7124, BC1 (2012)AD_ch09_At.09N/A104.6dc40134-370View
6TM-1 x Hai-7124, BC1 (2012)AD_ch23_Dt.09N/A126.5dc40134-500View
Sequence
>DC40134 ID=DC40134; Name=DC40134; organism=Gossypium hirsutum; type=genetic_marker; length=308bp
CTTCGAAACTGGACGAGATTATAAATAAATAAAAAAGATTAAGCAATCGA
AATTGAAAAACCAAAAAGGAAAATCGTTGATATAAAAGAAAGTAAACTTT
AATTTACCTTGAATTTGGATTGAATCTAATGGAAGAAAAAAAATTGTTGG
GGCGAGATAAGGAACTTTCAGAGCAGCCGGCGAAAGAGAGAGAGAGAGAG
AGAGATAAGGCATAAATCAGAAAGCCGGTTAGAGAGAGGGAGATAAATTG
GAAATTAATTAAATGGAGGAATTTCATATGGTAGTAGCACGTGTCAAGGT
ATAGCTGC