DC40080, DC40080 (genetic_marker) Gossypium hirsutum

Marker Overview
NameDC40080
Genbank IDGQ394591
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceMONCS1614
Source Typegenomic
Primer 1DC40080_F: GGTCCATAAGTTTGCAGTG
Primer 2DC40080_R: TTTGCAAGCATCCTAAGC
PolymorphismP_ DC40080
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394591
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D12chromosomeD12:2810446..2810687 -
A12chromosomeA12:3108928..3109165 -
CM018226.1chromosomeCM018226.1:2723521..2723762 -
CM018213.1chromosomeCM018213.1:2909263..2909500 -
KI_12chromosomeKI_12:12429882..12430123 -
tig00000498_CRI-A2_v1.0.a1chromosometig00000498_CRI-A2_v1.0.a1:524959..525196 -
D10_12chromosomeD10_12:2307135..2307375 -
CM016625.1chromosomeCM016625.1:122943022..122943259 +
Dt_chr1chromosomeDt_chr1:37700745..37700986 -
D12chromosomeD12:2621892..2622133 -
A12chromosomeA12:2953427..2953664 -
Ghir_D12chromosomeGhir_D12:2799393..2799634 -
Ghir_A12chromosomeGhir_A12:2992913..2993150 -
D12chromosomeD12:2768191..2768432 -
A12chromosomeA12:2923490..2923727 -
D12chromosomeD12:2817394..2817635 -
A12chromosomeA12:3056966..3057203 -
D12chromosomeD12:2800391..2800642 -
A12chromosomeA12:3029491..3029728 -
Dt12chromosomeDt12:2955541..2955782 -
Dt12chromosomeDt12:2953355..2953596 -
Dt12chromosomeDt12:2958667..2958906 -
scaffold15044supercontigscaffold15044:33164..33401 -
scaffold14601supercontigscaffold14601:20239..20480 -
scaffold14601supercontigscaffold14601:18053..18294 -
scaffold14601supercontigscaffold14601:23365..23604 -
Gbar_D12chromosomeGbar_D12:2698472..2698713 -
Gbar_A12chromosomeGbar_A12:2907402..2907639 -
D12chromosomeD12:2647958..2648199 -
A12chromosomeA12:2917403..2917640 -
CM017634.1chromosomeCM017634.1:2666067..2666308 -
CM017621.1chromosomeCM017621.1:2833378..2833615 -
CM017660.1chromosomeCM017660.1:2617944..2618184 -
CM017647.1chromosomeCM017647.1:3100697..3100934 -
CM017712.1chromosomeCM017712.1:2696846..2697087 -
CM017699.1chromosomeCM017699.1:2759848..2760085 -
D12chromosomeD12:2914048..2914289 -
A12chromosomeA12:3028239..3028476 -
Chr12chromosomeChr12:3031318..3031555 -
Chr12chromosomeChr12:3047710..3047947 -
Chr12chromosomeChr12:2661213..2661450 -
Chr_08chromosomeChr_08:2470080..2470320 -
Chr08chromosomeChr08:2443171..2443987 -
E12chromosomeE12:3013003..3013238 -
F12chromosomeF12:2412708..2412941 -
Chr12chromosomeChr12:3023723..3023954 -
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1614MONCS1614Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch26_Dt.12N/A0DC40080View
Sequence
>DC40080 ID=DC40080; Name=DC40080; organism=Gossypium hirsutum; type=genetic_marker; length=252bp
GGTCCATAAGTTTGCAGTGTATTGATTTTATTCACATTGGTCCCTCTCTC
TCTCTCTCTCTCTCTCTCTCTTTGTCAGAATAGCATGCTGAGGCTGCCCC
ACTCACCATTTTCGTTTTTCTTAGGCTCTTAAAGAGTCCGTTTCTGTGTT
TCCTGTGTTTCCCCGGTGAAGAAGATTTGGAGATTGTATTCAGTTCAACA
ACACATTCCCAATTTTACTTAAGTTAAACACCTAGCTTAGGATGCTTGCA
AA