CM0003, CM0003 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCM0003
AliasCM003
Genbank IDCC466066
TypeSSR
SpeciesGossypium hirsutum
GermplasmCoker 312
Source SequenceCC466066
Source Typegenomic
Repeat Motif(AG)22
Primer 1CM003_F: GGGCTAAACTTGAAAAATGACCA
Primer 2CM003_R: GTCTTAAAGACTGACATGCAGC
PolymorphismP_ CM0003
Publication[view all]
ContactPepper, Alan E.
CommentPrimer data obtained in 2000
Contact
NameDetails
Pepper, Alan E.
Description:Comparative genomics with Arabidopsis.
First name:Alan
Last name:Pepper
Title:Associate Professor
Institution:Texas A&M University/Department of Biology
Address:Building 1513/Borlaug Center, College Station, TX 77843-2123
Country:United States
Email:apepper@bio.tamu.edu
Phone:979-845-2518
Fax:979-862-4790
Last update:28-Feb-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCC466066
Germplasm
Stock NameType
Coker 312accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
CC466066CC466066Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Texas-701, F2 (2007)AD_ch19_Dt.05N/A14.1CM3-95View
2Emian-22 x 3-79, BC1 (2011)AD_ch19_Dt.05N/A33.21CM3View
3AD-genome wide Reference Map (2009)AD_ch19_Dt.05N/A294cm0003View
4TM-1 x 3-79, RIL (2012)AD_ch19_Dt.05N/A138.75cm0003View
5TM-1 x 3-79, RIL (2014)AD_ch19_Dt.05N/A47.7cm0003View
6TM-1 x 3-79, RIL (2012.v3)AD_ch19_Dt.05N/A47.73CM0003View
Sequence
>CM0003 ID=CM0003; Name=CM0003; organism=Gossypium hirsutum; type=genetic_marker; length=122bp
GGGCTAAACTTGAAAAATGACCATTTTCCTATATAATGCAGAGGCAGAGA
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCAAAACTGGAA
GCTGCATGTCAGTCTTTAAGAC