CIR0405, CIR0405 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0405
AliasCIR405
Genbank IDAJ567329
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567329
Source Typegenomic
Repeat Motif(TG)15
PCR ConditionAnnealing temperature: 46
Primer 1CIR405_F: AGATGTATCATGTGTGTG
Primer 2CIR405_R: ACGTTACTGTAGCCTTAT
Product Length165
PolymorphismP_ CIR0405
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567329
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567329AJ567329Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch06_At.06N/A127.4CIR405View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch06_At.06N/A57.51CIR405View
3Guazuncho-2 x VH8-4602, RIL (2009)AD_ch06_At.06N/A22.23CIR405View
4AD-genome wide Reference Map (2009)AD_ch06_At.06N/A93cir0405View
Sequence
>CIR0405 ID=CIR0405; Name=CIR0405; organism=Gossypium hirsutum; type=genetic_marker; length=165bp
AGATGTATCATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACGTATGCA
TTTGTTCTCAACNTTTTCTATGCAAGAATCCTACATTGGGCACGAGCACT
ATATTTACAACGCTTTAACATGAACAGGGCAAGGAGNAAACCCACCCATA
AGGCTACAGTAACGT