CIR0380, CIR0380 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0380
AliasCIR380
Genbank IDAJ567308
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567308
Source Typegenomic
Repeat Motif(CA)9
PCR ConditionAnnealing temperature: 51
Primer 1CIR380_F: CTATCTTTCCACGTCCATA
Primer 2CIR380_R: CTTCTTCATTTTCCCTTTT
Product Length178
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567308
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A13chromosomeA13:12829941..12830380 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567308AJ567308Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A102.17CIR380View
2Guazuncho-2 x VH8-4602, RIL (2009)AD_ch13_At.13N/A44.88CIR380View
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch13_At.13N/A159.4CIR380View
4AD-genome wide Reference Map (2009)AD_ch13_At.13N/A168cir0380View
Sequence
>CIR0380 ID=CIR0380; Name=CIR0380; organism=Gossypium hirsutum; type=genetic_marker; length=178bp
CTATCTTTCCACGTCCATATTAAGCAAAAACACCACCTTCGAAAAAAAAT
TTCTTGTGTGTCTATGAATCTTCTCTAGTTAAGGAAAAGACAAAATCAGG
GGAACTATGTTCTCTTTTAATTCACTTCCAAAGAACCCACACACACACAC
ACACAAAAAAAAAGGGAAAATGAAGAAG