CIR0375, CIR0375 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0375
AliasCIR375
Genbank IDAJ567305
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567305
Source Typegenomic
Repeat Motif(GT)6
PCR ConditionAnnealing temperature: 55
Primer 1CIR375_F: CCAAAATTAGGTGCGTGT
Primer 2CIR375_R: TAAAAGTTGAACATCCTACG
Product Length155
PolymorphismP_ CIR0375
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567305
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:6220250..6220404 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:5853097..5853249 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:5033373..5033529 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_02chromosomeD10_02:5934061..5934215 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr3chromosomeDt_chr3:23423165..23423319 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:5902890..5903044 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:6001569..6001723 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:5870181..5870335 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:6035144..6035298 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:5868156..5868310 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt03chromosomeDt03:6806284..6806436 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold25830supercontigscaffold25830:83896..84048 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:5893935..5894087 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:6030797..6030949 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:5904479..5904631 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:6131422..6131576 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:6003832..6003986 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:6140285..6140439 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:5674017..5674173 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr03chromosomeChr03:5786235..5786389 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:5027852..5028006 +Gossypium armourianum (D2-1) genome ISU_v1n/a
chr03chromosomechr03:5027578..5028678 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:3988300..3988452 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:6136012..6136166 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:4196911..4197063 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeCIR0375:1..432 .
Chr03:5895062..5895495 +		n/a
Chr3chromosomeCIR0375:1..432 .
Chr3:19030954..19031387 +		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567305AJ567305Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch17_Dt.03N/A89.6CIR375View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch17_Dt.03N/A39.07CIR375View
3Emian-22 x 3-79, BC1 (2011)AD_ch17_Dt.03N/A91.62CIR375View
4Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch17_Dt.03N/A58.3CIR375View
5Emian-22 x 3-79, BC1 (2015)AD_ch17_Dt.03N/A95.9CIR375View
6AD-genome wide Reference Map (2009)AD_ch17_Dt.03N/A137cir0375View
Sequence
>CIR0375 ID=CIR0375; Name=CIR0375; organism=Gossypium hirsutum; type=genetic_marker; length=155bp
CCAAAATTAGGTGCGTGTGTGTGTGTTCTTTCATGAAAAAATCGAGGCAA
AATCGAACCTAGCTCAGACCGCACGGTCTACCACACAGGCATGTAGACTA
TACGGCCTCATACATTGTCATGTCACCCTTAAAACCGTAGGATGTTCAAC
TTTTA