CIR0361, CIR0361 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0361
AliasCIR361
Genbank IDAJ567294
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567294
Source Typegenomic
Repeat Motif(CA)7
PCR ConditionAnnealing temperature: 51
Primer 1CIR361_F: ATCTCATAGGCAGCACAC
Primer 2CIR361_R: TTTTACGTTGAAAATCACAT
Product Length174
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567294
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:61434762..61434939 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:58629295..58629472 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Dt_chr11chromosomeDt_chr11:50189645..50189822 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:57747469..57747646 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:61181489..61181666 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:60787934..60788111 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:59701885..59702062 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:57560388..57560563 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:60685256..60685431 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold21863supercontigscaffold21863:15909..16084 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:58584461..58584638 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:59433063..59433240 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017658.1chromosomeCM017658.1:60868499..60868754 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:60034685..60034858 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:61315845..61316022 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567294AJ567294Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2006)AD_ch20_Dt.10N/A19.4CIR361View
2(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch20_Dt.10N/A79.1CIR361View
3Yumian-1 x T586, RIL (2015)AD_ch20_Dt.10N/A119.4CIR361View
4Yumian-1 x T586, RIL (2009)AD_ch20_Dt.10N/A94.8CIR361/190tView
Sequence
>CIR0361 ID=CIR0361; Name=CIR0361; organism=Gossypium hirsutum; type=genetic_marker; length=174bp
ATCTCATAGGCAGCACACGGCCGTGTGGACCACTCGTGTGGTCCAAAATC
CACACCCAAATTTGCTGATAAGTGTTAAGAACACATACGCACACATATAC
ACATGCACGTACGCACGCACGCACGTACTCACGCACACACACACACACCT
AAAAATGTGATTTTCAACGTAAAA