CIR0329, CIR0329 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0329
AliasCIR329
Genbank IDAJ567266
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567266
Source Typegenomic
Repeat Motif(CA)16
PCR ConditionAnnealing temperature: 55
Primer 1CIR329_F: AATATGTGAATGGCCCC
Primer 2CIR329_R: GCGGATTCTGCTGCT
Product Length120
PolymorphismP_ CIR0329
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567266
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567266AJ567266Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Deltapine-61 x Texas-701, F2 (2007)AD_ch10_At.10N/A0CIR329-281View
2AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A68cir0329View
3AD-genome wide Reference Map (2009)AD_ch06_At.06N/A35cir0329View
4TM-1 x Hai-7124, BC1 (2007)AD_ch06_At.06N/A73.3CIR329-220View
5TM-1 x Hai-7124, BC1 (2008)AD_ch06_At.06N/A84.04CIR329-220View
6TM-1 x Hai-7124, BC1 (2012)AD_ch06_At.06N/A83CIR329-220View
7TM-1 x Hai-7124, BC1 (2007)AD_ch25_Dt.06N/A73.8CIR329-240View
8TM-1 x Hai-7124, BC1 (2008)AD_ch25_Dt.06N/A66.67CIR329-240View
9TM-1 x Hai-7124, BC1 (2012)AD_ch25_Dt.06N/A76.3CIR329-240View
10CCRI-35 x Yumian-1, RIL (2015)AD_ch02_At.02N/A77.4CIR329View
11CCRI-35 x Yumian-1, RIL (2017)AD_ch02_At.02N/A35.31CIR329View
Sequence
>CIR0329 ID=CIR0329; Name=CIR0329; organism=Gossypium hirsutum; type=genetic_marker; length=120bp
AATATGTGAATGGCCCCTCCACTCCAATGATGTATCTCTTTATATAAACA
CACACACACACACACACACACACACACACAAATTCCAATGTTCAGTCCAC
GCGTAAGCAGCAGAATCCGC