CIR0274, CIR0274 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0274
AliasCIR274
Genbank IDAJ567218
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567218
Source Typegenomic
Repeat Motif(AC)8
PCR ConditionAnnealing temperature: 50
Primer 1CIR274_F: CAACCCTTCTATTTCCC
Primer 2CIR274_R: CCCTTGTTTCTCTCTCAC
Product Length311
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567218
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
CM018222.1chromosomeCM018222.1:59331435..59331743 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:112302515..112302835 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:55549138..55549447 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:122077620..122077941 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
scaffold2321.1supercontigscaffold2321.1:193150..193470 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr10chromosomeAt_chr10:76955019..76955329 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:59715333..59715643 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A08chromosomeA08:97351604..97351924 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:62264934..62265244 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A08chromosomeGhir_A08:115757586..115757906 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:62733109..62733419 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:118474413..118474733 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:62102040..62102348 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:118592381..118592701 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:59389901..59390209 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A08chromosomeA08:114533461..114533781 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold15574supercontigscaffold15574:56506..56814 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1209supercontigscaffold1209:74594..74914 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:59436001..59436309 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:112994030..112994350 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:61330803..61331111 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:114035647..114035967 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:60989627..60989935 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:63230393..63230703 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:122101448..122101768 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:59727497..59727805 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:113168325..113168645 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:62876651..62876961 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A08chromosomeA08:120457502..120457822 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:124754932..124755252 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:125670507..125670828 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:56430192..56430502 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:57898326..57898637 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr04chromosomeChr04:60300088..60300399 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:32230468..32230778 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:11244668..11244984 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Chr04chromosomeCIR0274:1..367 .
Chr04:56086773..56087139 +		n/a
Chr8chromosomeCIR0274:1..367 .
Chr8:5330993..5331359 +		n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567218AJ567218Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch24_Dt.08N/A76.57CIR274View
2TM-1 x 3-79, RIL (2014)AD_ch24_Dt.08N/A81.9CIR274View
3TM-1 x 3-79, RIL (2012.v3)AD_ch24_Dt.08N/A82.61CIR274View
Sequence
>CIR0274 ID=CIR0274; Name=CIR0274; organism=Gossypium hirsutum; type=genetic_marker; length=311bp
CAACCCTTCTATTTCCCCCTCTTTTTTTTTCTCAGTCTTCACTTCTTCAA
CAACACCGCCAAAAGTAGCCGTTACACAGAGATGGACATTTTCCTTTTTC
TCTGAGTCTTTCACTATTTATCAAAGGCAAAGGGAACGAACCCAACAACA
CGAATTTCTTTTTTCCTTTTTTGCTTTTGACGAGGGGGGCGTGATACACG
GGATATTGGGCTGCGGTTGAATCAGGCGCGTGGTTTTCGGGAATCGACAA
AAGCAGCAATGGTATATACACACACACACACACTAAGAACAACGTGAGAG
AGAAACAAGGG