CIR0268, CIR0268 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0268
AliasCIR268
Genbank IDAJ567212
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567212
Source Typegenomic
Repeat Motif(AC)8
PCR ConditionAnnealing temperature: 55
Primer 1CIR268_F: CTTTACCACCACAACCA
Primer 2CIR268_R: TCTCTCTGTTGTTCTCCC
Product Length92
PolymorphismP_ CIR0268
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567212
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:60116687..60116781 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:54889053..54889145 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:53039384..53039470 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:7988042..7988137 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:13268326..13268412 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:2232025..2232119 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:56469552..56469646 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:58583188..58583282 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:57632460..57632554 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:57792598..57792692 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:55066353..55066447 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:59118134..59118226 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold30621supercontigscaffold30621:66476..66568 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:55069464..55069556 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:55245149..55245241 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:55571914..55572006 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:58546222..58546314 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:55593681..55593773 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:58567786..58567880 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:52793795..52793881 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:15777999..15778087 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:55029482..55029572 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:42631769..42631859 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_10chromosomeChr_10:38265349..38265806 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:56795274..56795363 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:36201070..36201164 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:31180801..31180893 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:36833981..36834181 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:12409509..12409597 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:91161582..91161667 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567212AJ567212Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch25_Dt.06N/A43.1CIR268View
2CCRI-36 x Hai-7124, F2 (2007)AD_ch25_Dt.06N/A109.9CIR268View
3TM-1 x 3-79, RIL (2014)AD_ch25_Dt.06N/A39.2CIR268View
4901-001 x sGK156, F2 (2019)AD_ch25_Dt.06N/A122.78CIR268View
5AD-genome wide Reference Map (2009)AD_ch25_Dt.06N/A179cir0268View
6TM-1 x 3-79, RIL (2012.v3)AD_ch25_Dt.06N/A39.16CIR268View
Sequence
>CIR0268 ID=CIR0268; Name=CIR0268; organism=Gossypium hirsutum; type=genetic_marker; length=92bp
CTTTACCACCACAACCAAGAATAGGAAAAAAAACACACACACACACACTC
TTTTCTGTAAAACTCTGTTTGCAGGGGAGAACAACAGAGAGA