CIR0235, CIR0235 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0235
AliasCIR235
Genbank IDAJ567181
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567181
Source Typegenomic
Repeat Motif(TGG)6(N)70(TG)12
PCR ConditionAnnealing temperature: 50
Primer 1CIR235_F: GCTAGTGCCTGACGAC
Primer 2CIR235_R: CCCACACCCGTATTT
Product Length201
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567181
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567181AJ567181Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch13_At.13N/A147CIR235bView
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch05_At.05N/A284.6CIR235cView
3Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch18_Dt.13N/A93CIR235aView
4Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch26_Dt.12N/A133.2CIR235dView
5Guazuncho-2 x VH8-4602, consensus (2009)AD_ch13_At.13N/A91.72CIR235View
6Guazuncho-2 x VH8-4602, consensus (2009)AD_ch18_Dt.13N/A72.5CIR235View
7Guazuncho-2 x VH8-4602, consensus (2009)AD_ch26_Dt.12N/A86.68CIR235View
8Guazuncho-2 x VH8-4602, consensus (2009)AD_ch05_At.05N/A110.45CIR235View
9AD-genome wide Reference Map (2009)AD_ch05_At.05N/A282cir0235View
10AD-genome wide Reference Map (2009)AD_ch13_At.13N/A188cir0235View
11AD-genome wide Reference Map (2009)AD_ch18_Dt.13N/A115cir0235View
12AD-genome wide Reference Map (2009)AD_ch26_Dt.12N/A77cir0235View
Sequence
>CIR0235 ID=CIR0235; Name=CIR0235; organism=Gossypium hirsutum; type=genetic_marker; length=201bp
GCTAGTGCCTGACGACGGCGACGATGTGTAGCTGCTGCTGCGGCTGGTGG
TGGTGGTGGTGGTATGGTGATGGCGTGTTTGGCAGCAGCGGTGAGCGGGT
GCTCTGGGGTTGTGGCCGGGCTGGCTTTATAGTAGGTTTAGTAGATGGAT
AGCTAGAGAGGAAGGAGGCACCGGACACCGGGAGAAAAATACGGGTGTGG
G