CIR0200, CIR0200 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0200
AliasCIR200
Genbank IDAJ567146
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567146
Source Typegenomic
Repeat Motif(TA)5(TG)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR200_F: CCAGGATTCAGTTAGTTT
Primer 2CIR200_R: TTCTTGAACACATTTGG
Product Length216
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567146
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:22166748..22166964 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:20062481..20062699 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_04chromosomeD10_04:19885743..19885965 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:43348895..43349106 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:35272326..35272542 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:20378353..20378569 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A05chromosomeGhir_A05:91456445..91456652 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:20935287..20935503 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:20629455..20629671 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:20634269..20634485 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:20174176..20174392 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4830supercontigscaffold4830:443689..443907 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Scaffold3589supercontigScaffold3589:20460..20667 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D04chromosomeGbar_D04:20256842..20257060 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:20183525..20183743 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:20193467..20193681 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017704.1chromosomeCM017704.1:20083417..20083637 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:21337084..21337300 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:31129707..31129931 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr12chromosomeChr12:20234681..20234919 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:17091282..17091852 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr12chromosomeChr12:12148753..12148965 -Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567146AJ567146Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch23_Dt.09N/A145.5CIR200View
2Guazuncho-2 x VH8-4602, consensus (2009)AD_ch23_Dt.09N/A77.75CIR200View
3GX1135 x GX100-2, F2 (2013)AD_ch13_At.13N/A103.8CIR200View
4AD-genome wide Reference Map (2009)AD_ch23_Dt.09N/A118cir0200View
Sequence
>CIR0200 ID=CIR0200; Name=CIR0200; organism=Gossypium hirsutum; type=genetic_marker; length=216bp
CCAGGATTCAGTTAGTTTTAAGTATTAAATTGTCGATTTTTTATTTTGGT
TATAATGTTTAGTAAATTTATGGTACATGACTTGTATATGATATGTGTAT
ATATATATGTGTGTGTGTGTGTATGTAACATAAGGTTGAAATGTTTAAGT
TATTAAACAGGCATATATGTTAAGTAAAATTTGCAATGGGGTCTAAGAAC
CAAATGTGTTCAAGAA