CIR0175, CIR0175 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCIR0175
AliasCIR175
Genbank IDAJ567122
TypeSSR
SpeciesGossypium hirsutum
GermplasmGuazuncho-2
Source SequenceAJ567122
Source Typegenomic
Repeat Motif(TA)5(N)5(TG)7
PCR ConditionAnnealing temperature: 55
Primer 1CIR175_F: TGCAACAAACTTCAACTC
Primer 2CIR175_R: TCCAAAGAAGAATATGGTC
Product Length103
PolymorphismP_ CIR0175
Publication[view all]
CommentPrimer data obtained in 2005
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankAJ567122
Germplasm
Stock NameType
Guazuncho-2accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
AJ567122AJ567122Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-36 x Hai-7124, F2 (2007)AD_ch16_Dt.07N/A20.4CIR175View
2Guazuncho-2 x VH8-4602, BC1 (2005)AD_ch16_Dt.07N/A218.2CIR175View
3Guazuncho-2 x VH8-4602, consensus (2009)AD_ch16_Dt.07N/A122.88CIR175View
4Guazuncho-2 x VH8-4602, RIL (2009)AD_ch16_Dt.07N/A57.78CIR175View
5Emian-22 x 3-79, BC1 (2011)AD_ch16_Dt.07N/A142.88CIR175View
6AD-genome wide Reference Map (2009)AD_ch14_Dt.02N/A110cir0175View
7AD-genome wide Reference Map (2009)AD_ch16_Dt.07N/A36cir0175View
8TM-1 x Hai-7124, BC1 (2007)AD_ch14_Dt.02N/A66.4CIR175-120View
9TM-1 x Hai-7124, BC1 (2008)AD_ch14_Dt.02N/A64.98CIR175-120View
10TM-1 x Hai-7124, BC1 (2012)AD_ch14_Dt.02N/A47.7CIR175-120View
Sequence
>CIR0175 ID=CIR0175; Name=CIR0175; organism=Gossypium hirsutum; type=genetic_marker; length=103bp
TGCAACAAACTTCAACTCTTTTTCTGAATAATTCATTTCCATCCTATCAT
GTATATATATACATTATGTGTGTGTGTGTGTATAGACCATATTCTTCTTT
GGA