CGR6807, CGR6807 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6807
Genbank IDGQ394249
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS1214
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6807_F: TGCTGAAACGAAACCTCGTA
Primer 2CGR6807_R: AAGTGACAAATCCACTGCCC
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ394249
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:50745629..50745810 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:49642378..49642553 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:44188042..44188240 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr2chromosomeDt_chr2:18823794..18823975 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:47976809..47976990 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:49754814..49754995 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:51582020..51582201 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:51140039..51140220 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:48679736..48679917 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold5326supercontigscaffold5326:352522..352697 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:49879444..49879619 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:50562755..50562930 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:50715447..50715619 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:51892427..51892608 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:50074170..50074345 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:51621585..51621766 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:39709221..39709419 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:47959775..47959962 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr02chromosomeChr02:48791372..48791556 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:34514677..34514989 +Gossypium lobatum (D7) genome ISU_v1n/a
Chr02chromosomeCGR6807:1..506 .
Chr02:50015175..50015699 +		n/a
Chr2chromosomeCGR6807:1..506 .
Chr2:13335068..13335592 -		n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS1214MONCS1214Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch15_Dt.01N/A70.5CGR6807View
20-153 x sGK9708, RIL (2016)AD_ch15_Dt.01N/A28.7CGR6807View
3Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A41CGR6807View
4TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A57.3cgr6807-400View
Sequence
>CGR6807 ID=CGR6807; Name=CGR6807; organism=Gossypium hirsutum; type=genetic_marker; length=183bp
TGCTGAAACGAAACCTCGTAGTCATAGGCTCAAAAAGGCTCATCATCATC
ATCATCATCATCATCATCATCTCCCTCGTTATTTTCATCGTCATTGTCGT
TATCGTCATCATCCTCTTCTTCCCCTCGGTTTCGTCGGATGGTGGGACTG
GCACATATTTGTTGGGCAGTGGATTTGTCACTT