CGR5883, CGR5883 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5883
Genbank IDGQ393818
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0783
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5883_F: CGGCGCTACAGGACATAAGA
Primer 2CGR5883_R: GAGAGCAGGCAGTTGGAGAA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393818
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:52820748..52820894 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:47781723..47781873 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:96253739..96253896 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:46027846..46027990 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:14902105..14902253 +Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr10chromosomeAt_chr10:21308845..21309006 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr10chromosomeDt_chr10:45703318..45703464 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:49079118..49079264 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:84355561..84355722 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:51379035..51379181 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:103365163..103365322 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:50688850..50688996 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:106266508..106266669 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:50599650..50599796 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:47874841..47874987 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:49844418..49844568 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7844supercontigscaffold7844:256385..256542 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7934supercontigscaffold7934:157857..158007 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:47957354..47957502 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:95266643..95266798 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:48264587..48264737 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:98466856..98467013 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:48531458..48531604 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:101066239..101066408 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:51280547..51280693 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:105678914..105679055 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:48480583..48480737 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:99786003..99786170 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:51275683..51275829 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:105996152..105996300 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:45798036..45798180 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:20816578..20816736 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:48160857..48160999 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:36300692..36300838 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr10chromosomeChr10:49572830..49572972 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:31540649..31540798 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:26884399..26884923 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr10chromosomeChr10:32116106..32116252 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr06chromosomeChr06:40088000..40088154 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0783MONCS0783Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, RIL (2015)AD_ch06_At.06N/A37.3CGR5883View
2GX1135 x GX100-2, RIL (2016)AD_ch06_At.06N/A83.7CGR5883View
30-153 x sGK9708, RIL (2016)AD_ch06_At.06N/A40.4CGR5883View
4GX1135 x VGX100-2, RIL (2016)AD_ch06_At.06N/A73.3CGR5883View
Sequence
>CGR5883 ID=CGR5883; Name=CGR5883; organism=Gossypium hirsutum; type=genetic_marker; length=147bp
CGGCGCTACAGGACATAAGACGACCTACTATATAAGTCGGGGTACATGAA
GGAATAGGGATCTCTCTTTCTCTCTCTCTCTCTCTCTCTCAAGGAAGCTC
ATCGATCCTACTCCTTCATTCACCTTATTCTCCAACTGCCTGCTCTC