CGR5875, CGR5875 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5875
Genbank IDGQ393813
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0778
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5875_F: CAATCAAGCTATTCACACACCC
Primer 2CGR5875_R: TGGGCTTGCTGAAATAAGAGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393813
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:3503563..3503701 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:2525289..2525425 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2493800..2493934 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A01chromosomeA01:2263570..2263708 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:21187291..21187427 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:2815923..2816059 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:2692773..2692911 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:2818433..2818569 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:2770399..2770537 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold12265supercontigscaffold12265:258095..258231 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:2514792..2514928 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:2515355..2515491 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:3034223..3034353 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:2560484..2560613 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:2542021..2542157 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:2815908..2816046 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:2534627..2534760 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:2426837..2426971 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr02chromosomechr02:2297741..2298335 -Gossypium armourianum (D2-1) genome ISU_v1n/a
F01chromosomeF01:2371838..2371978 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0778MONCS0778Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A141CGR5875View
2DH962 X Ji Mian 5, F2 (2015)AD_ch01_At.01N/A21.76MON_CGR5875View
3DH962 X Ji Mian 5, F2 (2015)AD_ch15_Dt.01N/A21.76MON_CGR5875View
4DH962 x Ji Mian 5, RIL (2015)AD_ch01_At.01N/A82.8MON_CGR5875View
5DH962 x Ji Mian 5, RIL (2015)AD_ch15_Dt.01N/A82.8MON_CGR5875View
6TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch01_At.01N/A111.5CGR5875aView
7TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch01_At.01N/A0CGR5875bView
8TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A106.3cgr5875-170View
Sequence
>CGR5875 ID=CGR5875; Name=CGR5875; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
CAATCAAGCTATTCACACACCCTTATATCGAATCAACAATCAAATATTGC
CACAACCACAATCAAAGCAAACACATACACACACACACATATATATATAT
ATATATATAGGATGAAAGTCTCTTATTTCAGCAAGCCCA