CGR5873, CGR5873 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5873
Genbank IDGQ393812
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0777
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5873_F: AGTGGAGTTATGGCGAGGAA
Primer 2CGR5873_R: CGGATAACTATTATACCATCCTTGG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393812
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:84743721..84743877 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:83381268..83381410 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:104882635..104882819 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:19138349..19138595 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:75070142..75070298 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:88646153..88646307 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:90076620..90076776 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:88819450..88819604 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:83931414..83931570 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold18684supercontigscaffold18684:10564..10706 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:83507168..83507310 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:85325667..85325809 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:84854529..84854691 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:92321712..92321842 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:86536567..86536733 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:91800361..91800517 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:55476642..55476812 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:24437659..24437847 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:121507162..121507294 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0777MONCS0777Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch10_At.10N/A8.1CGR5873View
2GX1135 x GX100-2, F2 (2013)AD_ch10_At.10N/A83.4CGR5873View
3GX1135 x GX100-2, RIL (2015)AD_ch10_At.10N/A23.1CGR5873View
4GX1135 x GX100-2, RIL (2016)AD_ch10_At.10N/A23.1CGR5873View
5CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch10_At.10N/A74.5CGR5873View
6Monsanto SSR Bin Map, (2009)AD_ch10_At.10N/A61CGR5873View
7MGG-293-793, MAGIC (2018)AD_ch10_At.10N/A90.64MON_CGR5873View
8TM-1 x Hai-7124, BC1 (2012)AD_ch10_At.10N/A65.8cgr5873-140View
Sequence
>CGR5873 ID=CGR5873; Name=CGR5873; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
AGTGGAGTTATGGCGAGGAATATGAGAGGCATGAATATTCAGATAAACCT
CCATATGATTTGTATGGATATGCTATCGAGAGGGAGAGAGAGAGAGAGAG
AGAGAGAGCTACAACCAAGGATGGTATAATAGTTATCCG