CGR5834, CGR5834 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5834
Genbank IDGQ393781
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0746
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5834_F: GGATGAAAGTCAAGCCCAAA
Primer 2CGR5834_R: GCCTTTATCATTCGGAACTCTT
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393781
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A01chromosomeA01:3202580..3202749 -
A01chromosomeA01:3503435..3503592 -
CM018215.1chromosomeCM018215.1:2321225..2321414 -
CM018202.1chromosomeCM018202.1:2525161..2525318 -
D5_01chromosomeD5_01:2352846..2353024 -
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:2493659..2493829 -
D10_01chromosomeD10_01:58246230..58246387 +
scaffold1463.1supercontigscaffold1463.1:54719..54888 +
scaffold3710_D01supercontigscaffold3710_D01:128045..128214 -
A01chromosomeA01:2263442..2263599 -
Ghir_D01chromosomeGhir_D01:2511645..2511814 -
Ghir_A01chromosomeGhir_A01:2815797..2815952 -
D01chromosomeD01:2389537..2389706 -
A01chromosomeA01:2692645..2692802 -
D01chromosomeD01:2506379..2506548 -
A01chromosomeA01:2818305..2818462 -
D01chromosomeD01:2308182..2308395 -
A01chromosomeA01:2770271..2770428 -
scaffold12265supercontigscaffold12265:258202..258359 +
scaffold7906supercontigscaffold7906:636172..636341 -
Gbar_D01chromosomeGbar_D01:2552694..2552861 -
Gbar_A01chromosomeGbar_A01:2514664..2514821 -
D01chromosomeD01:2450193..2450382 -
A01chromosomeA01:2515227..2515384 -
CM017623.1chromosomeCM017623.1:2563141..2563313 -
CM017610.1chromosomeCM017610.1:3034097..3034252 -
CM017649.1chromosomeCM017649.1:2374305..2374501 -
CM017701.1chromosomeCM017701.1:2699782..2699955 -
CM017688.1chromosomeCM017688.1:2541895..2542050 -
D01chromosomeD01:2510335..2510504 -
A01chromosomeA01:2815780..2815937 -
Chr01chromosomeChr01:2426693..2426866 -
Chr01chromosomeChr01:2328662..2328837 -
Chr02chromosomeChr02:2466476..2466629 -
chr02chromosomechr02:2297607..2298063 -
Chr02_5098540chromosomeChr02_5098540:3382..3539 -
Chr02chromosomeChr02:2683213..2683410 -
Chr02chromosomeChr02:2150703..2150852 -
Chr02chromosomeChr02:1871160..1871327 -
Chr02chromosomeChr02:2260526..2260756 -
Chr02chromosomeCGR5834:5..543 .
Chr02:2330118..2330780 -
Chr8chromosomeCGR5834:5..543 .
Chr8:61979131..61979718 +
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0746MONCS0746Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1W10 x TM-1, F2:3 (2015)AD_ch08_At.08N/A93.3CGR5834View
2Monsanto SSR Bin Map, (2009)AD_ch15_Dt.01N/A101CGR5834View
3TM-1 x Hai-7124, BC1 (2012)AD_ch15_Dt.01N/A100.9cgr5834-200View
Sequence
>CGR5834 ID=CGR5834; Name=CGR5834; organism=Gossypium hirsutum; type=genetic_marker; length=170bp
GGATGAAAGTCAAGCCCAAAAAAATACCTATAAAATTAAAGGGATAAAAC
AAAATCAAGAAAAAAAGAATCAAAGTATTAAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGAGGAGTCAAATGTATCAAATTCGATCAGGAGTTAGTTGAA
GAGTTCCGAATGATAAAGGC