CGR5571, CGR5571 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR5571
Genbank IDGQ393570
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0535
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR5571_F: TGAACATGGAAGTCCCACAA
Primer 2CGR5571_R: GAAACTCGTGTGTCGCTTGA
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393570
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:8287369..8287533 +
A02chromosomeA02:8642903..8643055 +
CM018216.1chromosomeCM018216.1:7527036..7527200 +
CM018203.1chromosomeCM018203.1:7776795..7776941 +
D5_03chromosomeD5_03:56326110..56326268 -
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:8800348..8800518 +
D10_03chromosomeD10_03:57723570..57723749 -
CM016616.1chromosomeCM016616.1:142908274..142908426 -
scaffold2214.1supercontigscaffold2214.1:67942..68094 -
Dt_chr5chromosomeDt_chr5:52646396..52646560 -
D02chromosomeD02:8105254..8105418 +
A02chromosomeA02:7975034..7975186 +
Ghir_D02chromosomeGhir_D02:7887866..7888030 +
Ghir_A02chromosomeGhir_A02:7931373..7931525 +
D02chromosomeD02:7577446..7577610 +
A02chromosomeA02:7642682..7642834 +
D02chromosomeD02:7923736..7923900 +
A02chromosomeA02:8193963..8194115 +
D02chromosomeD02:7866548..7866712 +
A02chromosomeA02:8172588..8172740 +
scaffold6235supercontigscaffold6235:150015..150161 -
scaffold34963supercontigscaffold34963:35019..35165 -
scaffold34963supercontigscaffold34963:36552..36716 -
Gbar_D02chromosomeGbar_D02:8032574..8032738 +
Gbar_A02chromosomeGbar_A02:7883121..7883267 +
D02chromosomeD02:7535096..7535260 +
A02chromosomeA02:7826357..7826503 +
CM017624.1chromosomeCM017624.1:8308999..8309163 +
CM017611.1chromosomeCM017611.1:7818235..7818393 +
CM017650.1chromosomeCM017650.1:8557322..8557486 +
CM017637.1chromosomeCM017637.1:8194137..8194292 +
CM017702.1chromosomeCM017702.1:7946003..7946167 +
CM017689.1chromosomeCM017689.1:7943948..7944094 +
D02chromosomeD02:8151311..8151475 +
A02chromosomeA02:8260027..8260179 +
Chr03chromosomeChr03:123233290..123233442 -
Chr03chromosomeChr03:121984590..121984760 -
Chr03chromosomeChr03:7074160..7074318 +
B_03chromosomeB_03:98437240..98437401 -
Chr05chromosomeChr05:7867021..7867221 +
chr05chromosomechr05:5874573..5874740 +
Chr_05chromosomeChr_05:5975957..5976124 +
Chr05chromosomeChr05:7984305..7984469 +
Chr05chromosomeChr05:5894977..5895135 +
Chr05chromosomeChr05:4746858..4747007 +
Chr05chromosomeChr05:6668944..6669102 +
E03chromosomeE03:10490921..10491070 +
F03chromosomeF03:8034073..8034234 +
Chr03chromosomeChr03:192855002..192855154 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0535MONCS0535Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A32.8CGR5571View
2Yumian-1 x 7235, RIL (2015)AD_ch02_At.02N/A44.6CGR5571View
3TM-1 x (TX-0256 + TX-1046), CSIL (2016)AD_ch02_At.02N/A93.8CGR5571View
4CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A74.6CGR5571View
5Monsanto SSR Bin Map, (2009)AD_ch02_At.02N/A61CGR5571View
6(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch02_At.02N/A2.2MON_CGR5571View
7TM-1 x Hai-7124, BC1 (2012)AD_ch02_At.02N/A52.8cgr5571-150View
Sequence
>CGR5571 ID=CGR5571; Name=CGR5571; organism=Gossypium hirsutum; type=genetic_marker; length=153bp
TGAACATGGAAGTCCCACAACTCAAACCTTTTTCTTCTTCTTCTTCTTCT
TCTTCTGCTGTGTTTGAAATCGAGGCTAAGGCCACGTTTATCATTGTCGA
TGAGCTGTTTGAGGAAGCCGGGAGGATTCTTTCTCAAGCGACACACGAGT
TTC