CICR0101, CICR0101 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCCRI0101
AliasCICR0101
Genbank IDEY197059
TypeSSR
SpeciesGossypium hirsutum
GermplasmXuzhou 142
Source SequenceEY197059
Source TypeEST
Repeat Motif(GAA)7
PCR ConditionAnnealing temperature: 57.29
Primer 1CCRI0101_F: GAAGTCATTGTTGAGGCTCC
Primer 2CCRI0101_R: AACTTTCCCTTACCATTCCC
Product Length239
Publication[view all]
ContactWang, Kun-Bo
Contact
NameDetails
Wang, Kun-Bo
First name:Kun-Bo
Last name:Wang
Title:Professor & Vice Director
Institution:Cotton Research Institute, Chinese Academy of Agricultural Sciences
Address:Huanghe Road No. 38, Anyang, Henan Province 455000
Country:China
Email:wkbcri@hotmail.com
Phone:86-372-2562203
Fax:86-372-2562256
Last update:4-Mar-2010
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEY197059
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:54018642..54018876 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:80103273..80103510 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:51911191..51911425 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:78695072..78695306 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:2238379..2238616 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:2824559..2824793 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:50183850..50184087 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:125037003..125037243 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:1295504..1295738 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold3985_D04supercontigscaffold3985_D04:4819..5053 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold7916supercontigscaffold7916:5232..5469 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:53820981..53821215 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:82741012..82741249 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:54522010..54522244 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:85450669..85450906 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:53664263..53664497 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:82987220..82987457 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:51692132..51692366 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:78660081..78660318 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold4058supercontigscaffold4058:98915..99149 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3621supercontigscaffold3621:105940..106174 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:49968852..49969086 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:79171126..79171360 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:55001894..55002128 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:79573929..79574163 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:51991134..51991371 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:54800450..54800684 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:89732235..89732469 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:52229217..52229451 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:79707088..79707322 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:55601813..55602047 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:86751434..86751671 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:106682765..106682999 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:108461651..108461885 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:2194296..2194533 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:2675071..2675305 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:51917018..51917258 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_12chromosomeChr_12:22205595..22205829 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:51808971..51809208 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:26178912..26179146 +Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:20305792..20306046 +Gossypium gossypioides (D6) genome ISU_v1n/a
E04chromosomeE04:103119354..103119585 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:88986927..88987161 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:175337962..175338196 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Xuzhou 142accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
EY197059EY197059Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1DH962 X Ji Mian 5, F2 (2015)AD_ch12_At.12N/A45.8CCRI101View
2DH962 x Ji Mian 5, RIL (2015)AD_ch12_At.12N/A0CCRI101View
3MGG-293-793, MAGIC (2018)AD_ch12_At.12N/A119.7CCRI101View
Sequence
>CCRI0101 ID=CCRI0101; Name=CCRI0101; organism=Gossypium hirsutum; type=genetic_marker; length=239bp
GAAGTCATTGTTGAGGCTCCAAAGGAGGCCCCAAAGAAAGAAGAAGTCAT
TGTTGAGGCAAAAACAATGGTTGAAGCTGAAAAGCAAAAGAAAAAGGAAG
AAGAAGAAGAAGAAGAAGATGAGATTATTGTTTTGGCTGAAAAGAAAAGT
GAAGGAGCTAAGAAAGAAGAACCCATTTGTAAAAGAAGTGAAAACTGAGG
CACCCATTGNTTGATCATAGGGAATGGTAAGGGAAAGTT