NBRI_e0625, NBRI_e0625 (genetic_marker) Gossypium herbaceum

Marker Overview
NameNBRI_e0625
Genbank IDHQ525459
TypeSSR
SpeciesGossypium herbaceum
GermplasmVagad
Source TypeEST
Repeat Motif(A)13
PCR ConditionAnnealing temperature: 57
Primer 1NBRI_e0625_F: TGATTCCCCTTTCACTTTGC
Primer 2NBRI_e0625_R: CACATCGAGCTGTTTCCTCA
Product Length104
Publication[view all]
CommentPrimer data obtained in 2012
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankHQ525459
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A02chromosomeA02:50037493..50037592 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018203.1chromosomeCM018203.1:47959263..47959365 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_2_4chromosomeKI_2_4:28632388..28632490 -Gossypioides kirkii genome ISU_v3n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:77987376..77987481 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr3chromosomeAt_chr3:94588311..94588410 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A02chromosomeA02:46770751..46770850 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A02chromosomeGhir_A02:50947568..50947667 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:29660404..29660499 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A02chromosomeA02:49057253..49057352 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A02chromosomeA02:49441817..49441916 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A02chromosomeA02:48904939..48905038 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At02chromosomeAt02:50821422..50821524 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At02chromosomeAt02:50815029..50815131 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9224supercontigscaffold9224:106050..106152 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9224supercontigscaffold9224:99657..99759 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4502supercontigscaffold4502:483113..483208 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A02chromosomeGbar_A02:48492964..48493066 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:28610662..28610757 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A02chromosomeA02:48988309..48988411 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017611.1chromosomeCM017611.1:48318441..48318543 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017637.1chromosomeCM017637.1:51713230..51713334 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:33560309..33560405 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017689.1chromosomeCM017689.1:48714955..48715057 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A02chromosomeA02:50409474..50409573 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:34051715..34051818 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:83652716..83652820 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_04chromosomeB_04:28766578..28766675 +Gossypium anomalum (B1) genome NSF_v1n/a
F02chromosomeF02:47387095..47387192 -Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Vagadaccession
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch02_At.02N/A49.9NBRI0862View
Sequence
>NBRI_e0625 ID=NBRI_e0625; Name=NBRI_e0625; organism=Gossypium herbaceum; type=genetic_marker; length=104bp
TGATTCCCCTTTCACTTTGCAAGAGAAAGGAGAAGACAACACCTGAAAAG
GAAAAAAAAAAAAACAACACCACAATGGACGCTATGAGGAAACAGCTCGA
TGTG