BNL4035, BNL4035 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL4035
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL4035_orig
Source Typegenomic
Repeat Motif(TG)10
PCR ConditionAnnealing temperature: 55
Primer 1BNL4035_F: TGCATCTGCATTTGGGATTA
Primer 2BNL4035_R: TAGCCAACCGTTACACACCA
PolymorphismP_ BNL4035
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:12944758..12944971 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:12224493..12224706 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:12093863..12094074 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_13chromosomeD10_13:12281362..12281569 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr13chromosomeDt_chr13:81380..81593 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:12530076..12530289 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:12504182..12504395 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:12221320..12221533 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:12727127..12727340 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:12403243..12403456 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8695supercontigscaffold8695:15589..15802 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:12415972..12416185 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:11821094..11821307 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017661.1chromosomeCM017661.1:12817049..12817268 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:12422374..12422585 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:12897917..12898130 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:19156121..19156369 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:12006560..12006771 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr13chromosomeChr13:12629141..12629402 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:10390984..10391608 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:10174094..10174301 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:12752678..12752923 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:10567325..10567542 -Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:7691004..7691251 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:10195269..10195482 -Gossypium lobatum (D7) genome ISU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL4035_origBNL4035_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch20_Dt.10N/A84.61BNL4035View
2AD-genome wide Reference Map (2009)AD_ch20_Dt.10N/A49BNL4035View
3PD 94042 x (AD)4-08, F2 (2016)AD_ch01_At.01N/A75.4BNL4035View
Sequence
>BNL4035 ID=BNL4035; Name=BNL4035; organism=Gossypium hirsutum; type=genetic_marker; length=214bp
TGCATCTGCATTTGGGATTAAGAATTGATTTCGAAAAGAAGGAAGTTCGT
ATTGGCAATTTCACTGCACAACTATATTTTAGCGGTTTAACCGCAATAAT
AAAAGTTGCATACGACCATATTGAGGTGTGTTCGGTTGGATGGGTCTACA
ATGCCCTTATTGGTGTGTGTGTGTGTGTGTGTGATTTGTGGAGATGGTGT
GTAACGGTTGGCTA