BNL3848, BNL3848 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3848
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3848_orig
Source Typegenomic
Repeat Motif(TG)11
PCR ConditionAnnealing temperature: 55
Primer 1BNL3848_F: GATGTGATAAGTGTATGTGAATAGTGC
Primer 2BNL3848_R: TGCAAGCATTACAAAACCCA
PolymorphismP_ BNL3848
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:10609749..10609972 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:9763931..9764175 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_07chromosomeD10_07:30236879..30237100 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr2chromosomeAt_chr2:10109494..10109717 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:9440032..9440255 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold23055supercontigscaffold23055:977..1200 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:9871687..9871913 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:9417476..9417699 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:10012246..10012469 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:9840376..9840599 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold2656supercontigscaffold2656:134304..134548 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A12chromosomeGbar_A12:48030993..48031192 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:9848809..9849053 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:9468462..9468706 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:10843825..10844044 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
A01chromosomeA01:10024071..10024294 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3848_origBNL3848_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1TM-1 x 3-79, RIL (2012)AD_ch01_At.01N/A32.01BNL3848View
2AD-genome wide Reference Map (2009)AD_ch15_Dt.01N/A134BNL3848View
3TM-1 x 3-79, RIL (2006)AD_ch15_Dt.01N/A21.3BNL3848View
4TM-1 x 3-79, RIL (2014)AD_ch01_At.01N/A112.4BNL3848View
5Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A101BNL3848View
6TM-1 x Hai-7124, BC1 (2008)AD_ch01_At.01N/A46.8BNL3848-155View
7TM-1 x Hai-7124, BC1 (2012)AD_ch01_At.01N/A85.4BNL3848-155View
8TM-1 x 3-79, RIL (2012.v3)AD_ch01_At.01N/A112.36BNL3848View
Sequence
>BNL3848 ID=BNL3848; Name=BNL3848; organism=Gossypium hirsutum; type=genetic_marker; length=224bp
GATGTGATAAGTGTATGTGAATAGTGCATTTAATTATTGCATGTGTGTGT
GTGTGTGTGTGTGAGCATAATATTAAAGGTGAGCTAATGTACTAAAAAGG
TTTGTGTATATATATATAATATATATGCGTGGGTTTTGATTATATAATAT
ATATATGCATATATGGATCTTGTTATATAATATATATATCTATATATATG
TATATGGGTTTTGTAATGCTTGCA