BNL3658, BNL3658 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL3658
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL3658_orig
Source Typegenomic
Repeat Motif(CT)13
PCR ConditionAnnealing temperature: 55
Primer 1BNL3658_F: GACAGTGGACTGCTGCCTTT
Primer 2BNL3658_R: AAGGCCAAGCACTTCAAAAA
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:12545617..12545822 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:12259118..12259335 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_08chromosomeKI_08:6775079..6775275 +Gossypioides kirkii genome ISU_v3n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:13807766..13807965 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016621.1chromosomeCM016621.1:126279599..126279790 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr4chromosomeAt_chr4:82873382..82873587 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:11991691..11991896 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:12548997..12549202 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:12274654..12274859 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:12657840..12658045 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:12423064..12423269 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9548supercontigscaffold9548:120610..120825 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:12665845..12666058 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:12364516..12364731 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:12770850..12771055 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:13146684..13146889 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:12506518..12506737 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:13119842..13120047 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:13661798..13662003 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:13919377..13919578 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:14289451..14289656 +Gossypium anomalum (B1) genome NSF_v1n/a
E08chromosomeE08:17631104..17631349 +Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:11721975..11722176 +Gossypium longicalyx (F1) genome NSF_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL3658_origBNL3658_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Handan-208 x Pima-90, F2:3 (2007)AD_ch08_At.08N/A186.8BNL3658*View
2Monsanto SSR Bin Map, (2009)AD_ch08_At.08N/A101BNL3658aView
3Monsanto SSR Bin Map, (2009)AD_ch24_Dt.08N/A81BNL3658bView
4AD-genome wide Reference Map (2009)AD_ch08_At.08N/A192bnl3658View
5Xinluzao-1 x Hai-7124, F2 (2008)AD_ch08_At.08N/A75.9bnl3658View
Sequence
>BNL3658 ID=BNL3658; Name=BNL3658; organism=Gossypium hirsutum; type=genetic_marker; length=206bp
GACAGTGGACTGCTGCCTTTAATGTTTTGGAAACATCCCAGAACTATGGC
TCTGGTTCTTAAATTTTTTATTTGAATTGAAGATACAGTTTCCAGAATGC
TTAGGTTTTAATCTGCTAGGTTGTGATAATCTTCTAAGGGATGTAAAGCT
GCTTCCTCTCTCTCTCTCTCTCTCTCTCTCTCCCCCTTTTTGAAGTGCTT
GGCCTT