BNL2823, BNL2823 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2823
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2823_orig
Source Typegenomic
Repeat Motif(AG)23
PCR ConditionAnnealing temperature: 55
Primer 1BNL2823_F: ATATTCATGCCTCTGCAGCC
Primer 2BNL2823_R: GTTTTTAGTTTTTGGACTTAGAGGC
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:67310841..67311038 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:120309406..120309587 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:61576938..61577125 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:114951459..114951636 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:59624463..59624638 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:130509686..130509869 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:1335266..1335428 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:1648361..1648518 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr9chromosomeAt_chr9:84846766..84846949 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold65125supercontigscaffold65125:363..546 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4842supercontigscaffold4842:39960..40143 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D06chromosomeD06:62945246..62945443 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:65567180..65567361 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:122842417..122842598 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
scaffold67-1_subseq_3489944_3606482_obj_A06supercontigscaffold67-1_subseq_3489944_3606482_obj_A06:100601..100784 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:64165357..64165554 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:64936245..64936428 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:124921185..124921366 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:61875507..61875690 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:120714421..120714604 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:65157564..65157751 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9863supercontigscaffold9863:103163..103340 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8883supercontigscaffold8883:59915..60102 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:61782407..61782592 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:113964912..113965089 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:61618487..61618674 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:117022548..117022727 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:61997746..61997931 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:120396223..120396406 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:65625166..65625352 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:125632915..125633082 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:62124294..62124475 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:118248329..118248510 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:65405315..65405512 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:127000940..127001123 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:129792013..129792196 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:59224633..59224806 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:3274522..3274711 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:61855477..61855636 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr10_5104597chromosomeChr10_5104597:9870..10032 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:63482403..63482581 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:40667678..40668189 +Gossypium aridum (D4) genome ISU_v1n/a
F06chromosomeF06:96903743..96903940 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:1252822..1252989 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2823_origBNL2823_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch06_At.06N/A153.54BNL2823View
2AD-genome wide Reference Map (2009)AD_ch06_At.06N/A214BNL2823View
3Xinluzao-1 x Hai-7124, F2 (2008)AD_ch06_At.06N/A0BNL2823View
Sequence
>BNL2823 ID=BNL2823; Name=BNL2823; organism=Gossypium hirsutum; type=genetic_marker; length=198bp
ATATTCATGCCTCTGCAGCCNTCCTAGGTGGGTAGTGCNTGAGGATCTCT
TAGGGTGTCTATTTCAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGTGTGTGTGTGTGTGTGTATGAATCTAAATAAAACCAAAC
CAACNAATATATTAAGTAAAAAAGCCTCTAAGTCCAAAAACTAAAAAC