BNL2732, BNL2732 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL2732
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL2732_orig
Source Typegenomic
Repeat Motif(AG)14
PCR ConditionAnnealing temperature: 55
Primer 1BNL2732_F: AACGAAGGAGGAATTTATTTCG
Primer 2BNL2732_R: TAGGCGAAGGGCAAATTATG
PolymorphismP_ BNL2732
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysis
D04chromosomeD04:6384398..6384592 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
A05chromosomeA05:93042424..93042634 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1
CM018218.1chromosomeCM018218.1:5846918..5847112 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
CM018206.1chromosomeCM018206.1:95752420..95752634 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1
KI_06chromosomeKI_06:47192356..47192551 +Gossypioides kirkii genome ISU_v3
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:91281109..91281317 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1
D10_04chromosomeD10_04:5776334..5776524 +Gossypium turneri (D10) genome NSF_v1_a2
CM016617.1chromosomeCM016617.1:9729555..9729750 +Gossypium australe (G2) genome CRI_v1.1
D04chromosomeD04:5654341..5654535 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
A05chromosomeA05:84793327..84793537 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1
Ghir_D04chromosomeGhir_D04:6319389..6319583 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
Ghir_A05chromosomeGhir_A05:102018654..102018863 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1
D04chromosomeD04:6216990..6217184 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
A05chromosomeA05:103363052..103363262 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1
D04chromosomeD04:6192650..6192844 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A05chromosomeA05:101999756..101999963 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1
A05chromosomeA05:100017759..100017969 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1
Dt04chromosomeDt04:5977799..5977993 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
Dt04chromosomeDt04:5975768..5975962 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
At05chromosomeAt05:85804854..85805080 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold13974supercontigscaffold13974:724020..724214 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold13974supercontigscaffold13974:721989..722183 +Gossypium barbadense (AD2) '3-79' genome HAU_v1
scaffold21229supercontigscaffold21229:1919..2145 -Gossypium barbadense (AD2) '3-79' genome HAU_v1
Gbar_D04chromosomeGbar_D04:5837153..5837347 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
Gbar_A05chromosomeGbar_A05:95772839..95773051 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1
D04chromosomeD04:5795745..5795939 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
A05chromosomeA05:100787115..100787329 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1
CM017626.1chromosomeCM017626.1:5939623..5939818 +Gossypium tomentosum (AD3) genome HGS_v1.1
CM017614.1chromosomeCM017614.1:97709418..97709614 -Gossypium tomentosum (AD3) genome HGS_v1.1
CM017652.1chromosomeCM017652.1:6152831..6153025 +Gossypium mustelinum (AD4) genome JGI_v1.1
CM017640.1chromosomeCM017640.1:106219825..106220033 -Gossypium mustelinum (AD4) genome JGI_v1.1
CM017704.1chromosomeCM017704.1:6103056..6103250 +Gossypium darwinii (AD5) genome HGS_v1.1
CM017692.1chromosomeCM017692.1:98651642..98651856 -Gossypium darwinii (AD5) genome HGS_v1.1
D04chromosomeD04:6671865..6672059 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
A05chromosomeA05:103625164..103625374 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1
Chr04chromosomeChr04:7815968..7816166 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1
Chr04chromosomeChr04:7671541..7671747 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1
Chr04chromosomeChr04:44807419..44807615 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1
B_02chromosomeB_02:77380315..77380510 -Gossypium anomalum (B1) genome NSF_v1
Chr12chromosomeChr12:6153627..6153826 +Gossypium thurberi (D1-5) genome CRI_v1
Chr12chromosomeChr12:5924529..5924725 +Gossypium davidsonii (D3d-8) genome CRI_v1
Chr12chromosomeChr12:5627797..5627992 +Gossypium lobatum (D7) genome ISU_v1
E04chromosomeE04:9429645..9429840 +Gossypium stocksii (E1) genome NSF_v1
F04chromosomeF04:6321391..6321587 +Gossypium longicalyx (F1) genome NSF_v1
Chr04chromosomeChr04:9504591..9504783 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL2732_origBNL2732_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch05_At.05N/A178.21BNL2732View
2AD-genome wide Reference Map (2009)AD_ch05_At.05N/A286BNL2732View
3Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A0BNL2732View
4SG 747 x Giza 75, BIL (2013)AD_ch05_At.05N/A157.5BNL2732View
5Monsanto SSR Bin Map, (2009)AD_ch05_At.05N/A21BNL2732View
6PD 94042 x (AD)4-08, F2 (2016)AD_ch05_At.05N/A230.8BNL2732View
Sequence
>BNL2732 ID=BNL2732; Name=BNL2732; organism=Gossypium hirsutum; type=genetic_marker; length=211bp
AACGAAGGAGGAATTTATTTCGTTTAAAAAAGAGAGAGAGAGAGAGAGAG
AGAGAGAGGAGAGAAAGGGATCGCTGAAAGCAACACAACAGTGAGAAAGA
GGAAGGAATAGGAGGATCTTTGTTGGCTGGGGGAGTTTTGGGGGCTGCGA
ATTGCGATTAGCTTATATGAATGAATATCAGCTTGATTTTACATAATTTG
CCCTTCGCCTA