BNL1510, BNL1510 (genetic_marker) Gossypium hirsutum

Marker Overview
NameBNL1510
Genbank IDN/A
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 90
Source SequenceBNL1510_orig
Source Typegenomic
Repeat Motif(AG)17
PCR ConditionAnnealing temperature: 55
Primer 1BNL1510_F: AATTCATAAAAAAATAAAGGGCG
Primer 2BNL1510_R: CCAGTCTTTCCCACTCCTTT
CommentPrimer data obtained in 2000
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:4756802..4756948 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:4163147..4163295 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D10_03chromosomeD10_03:60928240..60928385 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold189.1supercontigscaffold189.1:767344..767490 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:4721078..4721224 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:4546564..4546710 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:4345936..4346082 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:4565342..4565486 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:4486087..4486233 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8917supercontigscaffold8917:112504..112652 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:4667255..4667403 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:4302632..4302780 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:4938361..4938507 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:5203185..5203335 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:4594207..4594355 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:4667671..4667817 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:3941229..3941379 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr05chromosomeChr05:4515393..4515538 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:2724175..2724317 -Gossypium gossypioides (D6) genome ISU_v1n/a
Germplasm
Stock NameType
Deltapine 90accession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
BNL1510_origBNL1510_origGossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Xinluzao-1 x Hai-7124, F2 (2008)AD_chUN/A23.9BNL1510View
2Emian-22 x 3-79, BC1 (2011)AD_ch14_Dt.02N/A86.5BNL1510View
3Handan-208 x Pima-90, F2:3 (2007)AD_ch13_At.13N/A69.1BNL1510View
Sequence
>BNL1510 ID=BNL1510; Name=BNL1510; organism=Gossypium hirsutum; type=genetic_marker; length=147bp
AATTCATAAAAAAATAAAGGGCGAGAGAGAGAGAGAGAGAGAGCGAGAGA
GAGAGAAATAGTTGGTTTAAAAACATGGGGTCTAATAAAGACGGAGTTTT
TCTTTTTTTCAGTTTCAATGTTCTATGAAAGGAGTGGGAAAGACTGG