CGR6078, CGR6078 (genetic_marker) Gossypium hirsutum

Marker Overview
NameCGR6078
Genbank IDGQ393923
TypeSSR
SpeciesGossypium hirsutum
GermplasmDeltapine 33 B
Source SequenceMONCS0888
Source Typegenomic
PCR ConditionAnnealing temperature: 55
Primer 1CGR6078_F: CATGCAAGAAAGCTGCTCAA
Primer 2CGR6078_R: TAGGCATGTGTCTCCGTGTG
Publication[view all]
ContactMonsanto
CommentPrimer data obtained in 2009-05
Contact
NameDetails
Monsanto
Country:United States
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankGQ393923
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D01chromosomeD01:61086549..61086666 -
A01chromosomeA01:100138347..100138466 -
CM018215.1chromosomeCM018215.1:59614263..59614390 -
CM018202.1chromosomeCM018202.1:109323368..109323489 -
D5_01chromosomeD5_01:53520232..53520383 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:95519313..95519424 -
D10_01chromosomeD10_01:3092601..3092716 +
CM016614.1chromosomeCM016614.1:133021785..133021890 -
scaffold42.1supercontigscaffold42.1:707454..707573 -
scaffold238.1supercontigscaffold238.1:406474..406591 -
D01chromosomeD01:58296761..58296878 -
A01chromosomeA01:96239736..96240037 -
Ghir_D01chromosomeGhir_D01:59963762..59963879 -
Ghir_A01chromosomeGhir_A01:113832632..113832751 -
D01chromosomeD01:61509351..61509468 -
A01chromosomeA01:114363558..114363677 -
D01chromosomeD01:61377110..61377227 -
A01chromosomeA01:112126374..112126491 -
A01chromosomeA01:108910077..108910196 -
At01chromosomeAt01:79602357..79602484 -
scaffold196supercontigscaffold196:857709..857836 +
scaffold19879supercontigscaffold19879:156106..156233 -
Gbar_D01chromosomeGbar_D01:59863402..59863527 -
Gbar_A01chromosomeGbar_A01:111800546..111800665 -
D01chromosomeD01:60518058..60518185 -
A01chromosomeA01:111785228..111785349 -
CM017623.1chromosomeCM017623.1:60744158..60744273 -
CM017610.1chromosomeCM017610.1:110366545..110366666 -
CM017649.1chromosomeCM017649.1:62257335..62257466 -
CM017636.1chromosomeCM017636.1:117853772..117853899 -
CM017701.1chromosomeCM017701.1:60208462..60208587 -
D01chromosomeD01:61866328..61866445 -
A01chromosomeA01:115754546..115754665 -
Chr01chromosomeChr01:119059210..119059319 -
Chr02chromosomeChr02:3848715..3848826 +
Chr01chromosomeChr01:49324663..49324800 -
B_01chromosomeB_01:94439029..94439144 -
Chr02chromosomeChr02:58074072..58074189 -
chr02chromosomechr02:44587607..44587848 -
F01chromosomeF01:95246101..95246222 -
Germplasm
Stock NameType
Deltapine 33 Baccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
MONCS0888MONCS0888Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch01_At.01N/A49.3CGR6078View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch01_At.01N/A69.5CGR6078View
3Monsanto SSR Bin Map, (2009)AD_ch01_At.01N/A41CGR6078View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch01_At.01N/A71.71CGR6078View
Sequence
>CGR6078 ID=CGR6078; Name=CGR6078; organism=Gossypium hirsutum; type=genetic_marker; length=120bp
CATGCAAGAAAGCTGCTCAACTGACAGGCAGGTTACAGCTAGCAAAGTCC
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCACACACACACACA
CACACGGAGACACATGCCTA