Gh300, Gh300 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh300
Genbank IDDQ908240
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908240
Source Typegenomic
Repeat MotifAG(11)
Primer 1Gh300_F: GGAAAACCCAAAATACATAAGAACCC
Primer 2Gh300_R: AGATTCTAACTTCCAGCAAGACATG
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908240
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:102821175..102821290 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:102622391..102622502 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:14302612..14302719 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016624.1chromosomeCM016624.1:128492944..128493068 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold165.1supercontigscaffold165.1:1405085..1405200 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:82577905..82578020 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:61816365..61816463 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:111669328..111669443 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:110254640..110254755 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:107733438..107733553 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:104552478..104552593 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At11chromosomeAt11:87036447..87036558 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold36141supercontigscaffold36141:34784..34882 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4420supercontigscaffold4420:403636..403747 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:58618794..58618892 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:101043447..101043558 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:104252071..104252182 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:108080764..108080903 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:114624862..114624981 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:103149838..103149949 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:112462655..112462770 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:116342103..116342214 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:114766562..114766669 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_11chromosomeB_11:88228076..88228182 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:58723427..58723527 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:39825689..39825795 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:38377965..38378067 -Gossypium lobatum (D7) genome ISU_v1n/a
F11chromosomeF11:87376895..87377045 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:16043704..16043810 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908240DQ908240Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2011)AD_ch11_At.11N/A65.96Gh300View
2TM-1 x 3-79, RIL (2012)AD_ch11_At.11N/A133.72Gh300View
3TM-1 x 3-79, RIL (2014)AD_ch11_At.11N/A136.8Gh300View
4TM-1 x 3-79, RIL (2012.v3)AD_ch11_At.11N/A136.81GH300View
Sequence
>Gh300 ID=Gh300; Name=Gh300; organism=Gossypium hirsutum; type=genetic_marker; length=112bp
GGAAAACCCAAAATACATAAGAACCCAACAAAAGAACAAATAAAGAGAGA
GAGAGAGAGAGAGAGAAGAAAGCTTTAATGAAAATACCATGTCTTGCTGG
AAGTTAGAATCT