Gh084, Gh084 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh084
AliasGh84
Genbank IDDQ908026
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908026
Source Typegenomic
Repeat MotifCT(6)
Primer 1Gh084_F: GTTCCCCTCTTGAGTCCAC
Primer 2Gh084_R: CCACTTGTTTGTAGCTCTTCTTC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908026
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:4392985..4393127 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:4431471..4431614 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018207.1chromosomeCM018207.1:4609124..4609267 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:3792637..3792780 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:3647445..3647590 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016619.1chromosomeCM016619.1:140448161..140448308 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr10chromosomeDt_chr10:25923655..25923797 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:3500214..3500356 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:3625610..3625753 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:4351877..4352019 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:4694299..4694442 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:4194423..4194565 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:4506620..4506803 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:4322368..4322510 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:4621448..4621591 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:3841402..3841544 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:4574554..4574697 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At06chromosomeAt06:4475178..4475321 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20185supercontigscaffold20185:23947..24089 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold10412supercontigscaffold10412:49742..49885 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A06chromosomeGbar_A06:4449430..4449573 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A06chromosomeA06:4577671..4577873 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017615.1chromosomeCM017615.1:4537341..4537484 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:4315643..4315785 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:4766545..4766688 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:4144938..4145079 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017693.1chromosomeCM017693.1:4688536..4688679 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:4417954..4418096 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:4705984..4706127 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:4584698..4584840 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:4699827..4699972 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:3805404..3805547 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:92937293..92937438 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:4218923..4219064 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_10chromosomeChr_10:3558357..3558502 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:4091984..4092111 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:3663870..3664010 -Gossypium lobatum (D7) genome ISU_v1n/a
E06chromosomeE06:112111011..112111154 +Gossypium stocksii (E1) genome NSF_v1n/a
F06chromosomeF06:3851608..3851751 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr06chromosomeChr06:197309873..197310010 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908026DQ908026Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
10-153 x sGK9708, RIL (2015)AD_ch25_Dt.06N/A99.09GH084View
20-153 x sGK9708, RIL (2016)AD_ch25_Dt.06N/A70.3GH084View
3CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch25_Dt.06N/A80.8GH84View
Sequence
>Gh084 ID=Gh084; Name=Gh084; organism=Gossypium hirsutum; type=genetic_marker; length=143bp
GTTCCCCTCTTGAGTCCACCCACCCTCTCTCTCTCTTGCTTTTTTTTTCC
CTTCCTTTTTTTGTTTATTCAATTGCTTGTGCAAACTAATAAAAGCTCCT
TATAACAAGAAGAAGAGGAAGAAGAAGAGCTACAAACAAGTGG