SWU07-221, SWU07-221 (genetic_marker) Gossypium spp.

Marker Overview
NameSWU07-221
Genbank IDCB066543
TypeSSR
SpeciesGossypium spp.
Repeat Motif(TCT)3
Primer 1SWU07-221_F: GTTCAAGTGTTAAATCGCATAG
Primer 2SWU07-221_R: AAGGAGGCTCATCTTCAGG
Product Length216
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCB066543
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_54supercontigscaffold_54:223527..224598 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D07chromosomeD07:2517812..2518888 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018221.1chromosomeCM018221.1:2246781..2247857 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018208.1chromosomeCM018208.1:2809885..2810956 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_07chromosomeD5_07:2257676..2258750 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:2674212..2675275 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_07chromosomeD10_07:51520599..51521641 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016620.1chromosomeCM016620.1:112737007..112738088 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold336.1supercontigscaffold336.1:240600..241671 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr1chromosomeDt_chr1:43665841..43666917 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold4170_D07supercontigscaffold4170_D07:25074..26150 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold1918_A07supercontigscaffold1918_A07:123434..124505 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:2502336..2503411 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A07chromosomeGhir_A07:2592193..2593264 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:2411566..2412642 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:2421365..2422436 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:2461714..2462790 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:2547015..2548085 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:2346602..2347678 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A07chromosomeA07:2623915..2624986 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D07chromosomeGbar_D07:2423690..2424766 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A07chromosomeGbar_A07:2663734..2664805 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D07chromosomeD07:2409506..2410582 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A07chromosomeA07:2585810..2586881 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017629.1chromosomeCM017629.1:2561015..2562091 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017616.1chromosomeCM017616.1:2452063..2453134 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017655.1chromosomeCM017655.1:2477925..2479001 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017642.1chromosomeCM017642.1:2611942..2613013 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017707.1chromosomeCM017707.1:2414767..2415843 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017694.1chromosomeCM017694.1:2662136..2663207 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D07chromosomeD07:2523092..2524168 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A07chromosomeA07:2610976..2612047 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:2601148..2602218 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:2650125..2651188 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr07chromosomeChr07:51275004..51276080 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_07chromosomeB_07:2862742..2863814 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr01chromosomeChr01:2309384..2310460 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:2373268..2374310 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:2401868..2402944 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:1776284..1777358 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:1777097..1778126 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:2075508..2076582 -Gossypium lobatum (D7) genome ISU_v1n/a
E07chromosomeE07:91301371..91302461 +Gossypium stocksii (E1) genome NSF_v1n/a
F07chromosomeF07:2383900..2384979 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr07chromosomeChr07:2992231..2993313 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>SWU07-221 ID=SWU07-221; Name=SWU07-221; organism=Gossypium spp.; type=genetic_marker; length=216bp
GTTCAAGTGTTAAATCGCATAGCCATGCCCCCGGACTTACCAGGTTGAGG
GTACGTTGAATAAATTTCGCTCGTTTTTTGGGTCTCTGCGGCAGCTTAGA
TCCTTTAATGGCCATGAAATCTTCTTCTTTCTCTTTATTAGTTAAAGCAA
TCACAAATTTTGGTGGCCAAACGATGGGTGGAGCTGCCTCACCGCTTCCT
GAAGATGAGCCTCCTT