SWU07-079, SWU07-079 (genetic_marker) Gossypium hirsutum

Marker Overview
NameSWU07-079
Genbank IDCA993342
TypeSSR
SpeciesGossypium hirsutum
Repeat Motif(AT)3
Primer 1SWU07-079_F: ACAAAATTCTAACCCTTTATCTC
Primer 2SWU07-079_R: ATGCCTTAATTCCTAGTGGA
Product Length212
Publication[view all]
Commentmarker sequence confirmed
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankCA993342
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D07chromosomeD07:51738107..51738591 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_07chromosomeD5_07:45979688..45980169 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_07chromosomeD10_07:6389335..6389817 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr1chromosomeDt_chr1:81684802..81685286 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D07chromosomeD07:48902194..48902678 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A07chromosomeA07:71992723..71993213 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D07chromosomeGhir_D07:53123516..53123986 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D07chromosomeD07:52305665..52306149 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D07chromosomeD07:52579614..52580098 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D07chromosomeD07:49056899..49057383 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
CM017629.1chromosomeCM017629.1:50668948..50669429 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
D07chromosomeD07:53147943..53148427 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:6323652..6324133 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr01chromosomeChr01:49674010..49674491 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_01chromosomeChr_01:32811098..32811580 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr01chromosomeChr01:49450956..49451436 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr01chromosomeChr01:34677654..34678134 -Gossypium aridum (D4) genome ISU_v1n/a
Chr01chromosomeChr01:27377701..27378182 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr01chromosomeChr01:33821806..33822285 -Gossypium lobatum (D7) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch16_Dt.07N/A18SWU07-079View
2CCRI-35 x Yumian-1, RIL (2015)AD_ch07_At.07N/A48.6SWU07-079View
3CCRI-35 x Yumian-1, RIL (2017)AD_ch16_Dt.07N/A124.8SWU07-079View
Sequence
>SWU07-079 ID=SWU07-079; Name=SWU07-079; organism=Gossypium hirsutum; type=genetic_marker; length=212bp
ACAAAATTCTAACCCTTTATCTCTGTAAGATGGGTTTTACATTAATTGTG
TAGTCCATCAGATACATGCATACATATATCACTAGTTTTTTTTTGCATTA
AGGGCTAAACGGCAGTGCATGATCTTTGGAATGTTCTCCATGGCCATGCC
AATCCTTAAGCAGTGGTAATGTAAGCTTCCTCAGATTACAGTTCCACTAG
GAATTAAGGCAT