PGML4891, PGML4891 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML4891
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTTT)4
Primer 1PGML4891_F: AACACATTTGGTTGCCCATT
Primer 2PGML4891_R: AATCATTACAAACCACGTTCG
Product Length316
PolymorphismP_ PGML4891
Publication[view all]
CommentBAC_ID=FITC35111.g1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:4825742..4826060 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:4213997..4214312 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:59524680..59524994 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold189.1supercontigscaffold189.1:836600..836918 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold7751supercontigscaffold7751:4170..4488 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D02chromosomeD02:4425401..4425719 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:4634344..4634662 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:4555102..4555420 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D02chromosomeGbar_D02:4727597..4727912 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:4363025..4363339 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:4999452..4999770 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:5263789..5264085 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:4654555..4654870 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:4736686..4737004 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:4576070..4576386 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x VGX100-2, RIL (2016)AD_ch14_Dt.02N/A10.6PGML4891View
2CCRI-36 x G2005, RIL (2016)AD_ch14_Dt.02N/A170.31PGML04891View
Sequence
>PGML4891 ID=PGML4891; Name=PGML4891; organism=Gossypium raimondii; type=genetic_marker; length=316bp
AACACATTTGGTTGCCCATTAATGCATATTAATTAAGAAACTCAATTATT
ATCCCTAACAACTTGCCATCAATACTATCTCCCAAATCATTCTTCATGTT
CATGCATCATTACCTCTCTAATTTTATTTTATTTTATTTTTCAACCTTAA
CCATCACTCCATCTACTTAATAAATAAATAAAAAAAATATAAGTGGAATA
AGTTGAGGTTTTGAAAATTTTAAAATTTTAAATGTATGAAATTTTAATCC
AAATTTTATTATAGTCTAAATTTAGATTTATTTTTTATAATAATTCGAAC
GTGGTTTGTAATGATT