PGML1942, PGML1942 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML1942
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AT)13
Primer 1PGML1942_F: TGGAATTGCTTGACATGGAT
Primer 2PGML1942_R: AAATAGTTGAATGTGGCGCA
Product Length235
PolymorphismP_ PGML1942
Publication[view all]
CommentBAC_ID=FITC188503.b1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:53665691..53665916 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:51532405..51532638 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:2575668..2575900 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:2371182..2371405 -Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:3251571..3251762 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr12chromosomeDt_chr12:1646773..1646998 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:48640173..48640398 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A04chromosomeGhir_A04:82364618..82364809 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:54191791..54192016 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:53322439..53322664 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:51347395..51347620 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D04chromosomeGbar_D04:49590227..49590460 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:78816207..78816398 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:54679314..54679547 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:51660739..51660968 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:80844434..80844625 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:54472964..54473187 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:89361696..89361887 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D04chromosomeD04:55259945..55260170 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:108034543..108034734 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:2531007..2531239 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:3145062..3145253 +Gossypium anomalum (B1) genome NSF_v1n/a
chr12chromosomechr12:27579530..27579734 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr12chromosomeChr12:51496257..51496504 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E04chromosomeE04:102599812..102600057 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:88666940..88667131 -Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch22_Dt.04N/A80.4PGML1942View
2GX1135 x VGX100-2, RIL (2016)AD_ch22_Dt.04N/A23.3PGML1942View
Sequence
>PGML1942 ID=PGML1942; Name=PGML1942; organism=Gossypium raimondii; type=genetic_marker; length=235bp
TGGAATTGCTTGACATGGATAATATTCTCTTCTCTTTCAAATAGTTAGGC
CCCAATTTTGAATATATATATATATATATATATATATGTGTGTGTATGTA
TGTACATGAGCCCTACCAATTTTGATTTCTCTCATCTAACATGCATCCAA
TACAAATGTACAGCCATAAATTTTGATGTAGACATAAAACTGAAAAAGGA
ATATGCTGATCATCATGCGCCACATTCAACTATTT