PGML1145, PGML1145 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML1145
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TAA)6
Primer 1PGML1145_F: AGCAGGCATTTGGTTCAGAC
Primer 2PGML1145_R: AAATTTGGTTCAATGGCAGC
Product Length179
Publication[view all]
CommentBAC_ID=FITC2724.g1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:60003935..60004113 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:99810405..99810586 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:55848092..55848267 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:103701965..103702146 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:54944047..54944225 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:119100634..119100814 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:56716904..56717082 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:154336219..154336390 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold626.1supercontigscaffold626.1:67239..67417 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr13chromosomeAt_chr13:24586237..24586418 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:55932182..55932360 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:75868198..75868379 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:59038959..59039138 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:103660246..103660427 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:59980043..59980221 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:105871950..105872131 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:59216889..59217067 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:104122159..104122340 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:55865234..55865412 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:102629275..102629456 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D13chromosomeGbar_D13:55647717..55647892 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:104579389..104579570 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:56773300..56773475 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:108085459..108085640 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:56619079..56619257 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:105742679..105742860 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:59906888..59907066 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:110808292..110808473 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:56457716..56457894 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:105795293..105795474 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:60307767..60307945 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:106851950..106852131 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:112866557..112866740 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:117446725..117446905 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:54924577..54924755 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:6340806..6340983 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:56101188..56101378 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr13chromosomechr13:41508377..41508654 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_13chromosomeChr_13:40036794..40036969 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:58928083..58928264 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:38885390..38885571 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:30207230..30207411 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:37885643..37885827 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:109502881..109503054 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:91283473..91283652 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:4056337..4056513 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1LMY22 x LY343, RIL (2016)chr.18N/A0PGML1145View
Sequence
>PGML1145 ID=PGML1145; Name=PGML1145; organism=Gossypium raimondii; type=genetic_marker; length=179bp
AGCAGGCATTTGGTTCAGACTGTCAGACACCAACTCTTACAATAATAATA
ATAATAATAACAACAACACTTCTCCTTCTGCCTTTTGTTTTTTACAATCT
TTTCAAATCCACTAACCCATTGCTTTTATGTGTTTTCAGTAGCATTGTCA
GAGACAAGAGCTGCCATTGAACCAAATTT