PGML0874, PGML0874 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0874
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(ATTTT)3
Primer 1PGML0874_F: AAGCCAAGATCTATGCGGTG
Primer 2PGML0874_R: TTAAGCGCGAAATCTGAACA
Product Length227
Publication[view all]
CommentBAC_ID=FITB851.x2 1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:35530966..35531191 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D04chromosomeD04:29358116..29358339 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D03chromosomeD03:47842731..47842957 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:34136605..34136830 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018218.1chromosomeCM018218.1:29921428..29921651 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018217.1chromosomeCM018217.1:48150347..48150573 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:32306603..32306827 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_02chromosomeD5_02:41771854..41772078 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D5_04chromosomeD5_04:23930115..23930339 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold154.1supercontigscaffold154.1:425106..425332 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr9chromosomeDt_chr9:31489629..31489854 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr12chromosomeDt_chr12:21962505..21962728 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:34807832..34808057 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D04chromosomeD04:26163256..26163479 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D03chromosomeD03:41703068..41703294 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:34848920..34849145 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D03chromosomeGhir_D03:47659366..47659592 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D04chromosomeGhir_D04:29183342..29183565 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:34056546..34056771 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:49022263..49022489 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:30469539..30469762 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:34628765..34628990 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:48638011..48638236 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:29673129..29673352 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:34313131..34313356 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D03chromosomeD03:47918397..47918621 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
D04chromosomeD04:27514485..27514708 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D05chromosomeGbar_D05:35009999..35010224 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D04chromosomeGbar_D04:28123307..28123530 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_D03chromosomeGbar_D03:46547092..46547318 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:34517728..34517953 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D03chromosomeD03:48940393..48940619 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
D04chromosomeD04:31061254..31061477 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:34425465..34425685 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017626.1chromosomeCM017626.1:30836334..30836557 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017625.1chromosomeCM017625.1:47370797..47371021 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:34903987..34904212 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017652.1chromosomeCM017652.1:32267230..32267453 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017651.1chromosomeCM017651.1:51489992..51490217 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:34563028..34563253 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017704.1chromosomeCM017704.1:30473607..30473830 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017703.1chromosomeCM017703.1:48959656..48959882 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:35433418..35433643 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D04chromosomeD04:33280266..33280489 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
D03chromosomeD03:49892295..49892521 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:32449908..32450133 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:43863914..43864140 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr04chromosomeChr04:23912459..23912683 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:24764835..24765054 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:24754895..24755114 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI-35 x Yumian-1, RIL (2015)AD_ch17_Dt.03N/A14.2PGML0874View
2CCRI-35 x Yumian-1, RIL (2017)AD_ch17_Dt.03N/A70.5PGML0874View
Sequence
>PGML0874 ID=PGML0874; Name=PGML0874; organism=Gossypium raimondii; type=genetic_marker; length=227bp
AAGCCAAGATCTATGCGGTGACCCGACCCGAGGGAAGGATCCGCGCATTT
CCATTCAATGGTTTATTTTTGAAATTAGTCCATTCGCATTAGATTTTATT
TCAAATCGGTTTTCCTCCAGTTTTTTTTTAAATCGTATCGCACATTTTAT
TTTATTTTCATTTGGATTCAAACCTAAACGGTGCCGTTTTCTATGAGTGG
TTTTGAATGTTCAGATTTCGCGCTTAA