PGML0776, PGML0776 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0776
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AATA)4
Primer 1PGML0776_F: AGGGCATCTGTAATAGGCCA
Primer 2PGML0776_R: GGTTAGGGAGGCTACGGTTT
Product Length188
Publication[view all]
CommentBAC_ID=FITB3320.y1
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:19917154..19917336 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:19055542..19055724 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:18066046..18066231 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_08chromosomeD10_08:44287514..44287700 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold5103.1supercontigscaffold5103.1:28177..28362 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr4chromosomeDt_chr4:25869612..25869797 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold22020supercontigscaffold22020:315..497 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
D08chromosomeD08:18564324..18564506 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:18721517..18721699 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:18473346..18473528 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:18252776..18252961 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:18654457..18654639 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D08chromosomeGbar_D08:18981991..18982173 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:19216609..19216791 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:19096858..19097041 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:20091246..20091428 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:19141276..19141459 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:19010464..19010646 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:17927985..17928172 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
chr04chromosomechr04:15453885..15454073 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:13526986..13527170 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:11107332..11107516 -Gossypium gossypioides (D6) genome ISU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch24_Dt.08N/A49.1PGML0776View
Sequence
>PGML0776 ID=PGML0776; Name=PGML0776; organism=Gossypium raimondii; type=genetic_marker; length=188bp
AGGGCATCTGTAATAGGCCATTTTTGCCTGGGCCCAACAAAAAAAAAAAC
AAACCAAATAAATAAATAAATAGTCCCAGTCCATTTACAACAGGCCCAAA
CAGCCCAAACCCAAAATAAAAAAAACCCTAGGTGGCCCGATAAGCCCAAA
AACTTAAACAATGTCAGAAAACCGTAGCCTCCCTAACC