PGML0592, PGML0592 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0592
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(TTTTA)3
Primer 1PGML0592_F: CTGGAGCACACGTTATGTTGA
Primer 2PGML0592_R: AGCACGGGTAGAGGAGAAGA
Product Length260
Publication[view all]
CommentBAC_ID=FITB10695.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:1778979..1779276 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:1750816..1751114 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:1606633..1606892 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_01chromosomeD10_01:58856532..58856843 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:2426012..2426274 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold783.1supercontigscaffold783.1:355690..355987 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:1702855..1703152 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:1753501..1753798 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:1700169..1700466 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:1731636..1731933 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:1544336..1544633 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D01chromosomeGbar_D01:1839791..1840089 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:1752133..1752431 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:1858321..1858619 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:1678890..1679188 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:1997816..1998114 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:1726536..1726833 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:1583861..1584118 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr02chromosomeChr02:1807638..1807897 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr02chromosomechr02:1629529..1629830 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_02chromosomeChr_02:1821999..1822305 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:1508752..1509407 -Gossypium lobatum (D7) genome ISU_v1n/a
F01chromosomeF01:1600624..1600893 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0592 ID=PGML0592; Name=PGML0592; organism=Gossypium raimondii; type=genetic_marker; length=260bp
CTGGAGCACACGTTATGTTGATTGGTATGGGTAATTGTTAAAATTGAGTC
ACCTGAATCCTTATTAAAATAAAATACAATGGTAAAATAAAATAAAATAA
AAGTAAAATCCATATAGAGCTACACTTCTTTTATTTTATTTTAGAATAAG
GTTTTTCAACCTCATTACACTTCATCTATTTGATGTTGATTAAAATAAGG
TGTTTAAATAGTAATCATTCGAATTAGACATAGTGAATTATCTTCTCCTC
TACCCGTGCT