PGML0582, PGML0582 (genetic_marker) Gossypium raimondii

Marker Overview
NamePGML0582
Genbank IDN/A
TypeSSR
SpeciesGossypium raimondii
Repeat Motif(AAAAT)3
Primer 1PGML0582_F: TTGTATTTGAAGGAGTTTGATGC
Primer 2PGML0582_R: TTTGTGCTTTGTGTGCAGAT
Product Length171
Publication[view all]
CommentBAC_ID=FITB10548.y2
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:52047657..52047827 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A09chromosomeA09:80214371..80214542 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:49200663..49200833 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018210.1chromosomeCM018210.1:75473830..75474001 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_09chromosomeD5_09:42381778..42381948 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:83419750..83419921 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_09chromosomeD10_09:1509251..1509421 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016622.1chromosomeCM016622.1:1861701..1861869 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4474.1supercontigscaffold4474.1:46865..47036 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold288.1supercontigscaffold288.1:1190908..1191078 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:49503472..49503642 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A09chromosomeA09:73358055..73358226 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:51398602..51398772 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A09chromosomeGhir_A09:80455585..80455756 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:51166081..51166250 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:81905277..81905448 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:49244253..49244423 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A09chromosomeA09:78269855..78270026 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Gbar_D09chromosomeGbar_D09:50053371..50053541 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A09chromosomeGbar_A09:76301962..76302133 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017631.1chromosomeCM017631.1:50161496..50161666 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017618.1chromosomeCM017618.1:77647755..77647926 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:51681045..51681215 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017644.1chromosomeCM017644.1:81034299..81034470 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:50869556..50869726 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017696.1chromosomeCM017696.1:77759025..77759196 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:53037417..53037587 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A09chromosomeA09:83724577..83724748 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:82809633..82809804 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:85554783..85554954 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr09chromosomeChr09:48618774..48618943 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_09chromosomeB_09:69063422..69063592 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr06chromosomeChr06:49455861..49456031 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr06chromosomeChr06:50558727..50558896 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr06chromosomeChr06:38468755..38468927 -Gossypium aridum (D4) genome ISU_v1n/a
Chr06chromosomeChr06:35777459..35777629 -Gossypium lobatum (D7) genome ISU_v1n/a
F09chromosomeF09:69266196..69266367 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>PGML0582 ID=PGML0582; Name=PGML0582; organism=Gossypium raimondii; type=genetic_marker; length=171bp
TTGTATTTGAAGGAGTTTGATGCATGAATCAAAATAAAATAAAATTTTTA
ACTAAATAGTATAATATTCATATTAATATGTTTTCAATATTTATATAGCT
TTATTTTCAATAAATTTACCGTTTATCTTAAAACCACATTAAAAAATATA
TATCTGCACACAAAGCACAAA